DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Usp14 and ubp2

DIOPT Version :9

Sequence 1:NP_001260321.1 Gene:Usp14 / 34387 FlyBaseID:FBgn0032216 Length:475 Species:Drosophila melanogaster
Sequence 2:NP_594208.1 Gene:ubp2 / 2542059 PomBaseID:SPAC328.06 Length:1141 Species:Schizosaccharomyces pombe


Alignment Length:638 Identity:120/638 - (18%)
Similarity:209/638 - (32%) Gaps:249/638 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 RELYTDIVVN-----TDEEPILFKAQLFALTGVQPD--RQKVMCKGGILKDDQWNLQIKDGAVV- 68
            |.|..|:::|     .::.|            .|.|  |..:.|.|          ::::..:: 
pombe   551 RALSDDVLINVYGFAVEDHP------------EQSDTLRAALKCIG----------EVRNSRLIT 593

  Fly    69 --LLLGSKESVPEVPATPVKFIEDMNEAEAATAMRLPAGLTNLGNTCYMNATVQCLNAVPELRTA 131
              |..|:.:..|||                 :::..|.||.|.||.||:|:.:|....:..||.|
pombe   594 HYLE
HGNLDIPPEV-----------------SSLDTPIGLENTGNLCYLNSLIQYYFIIKPLRNA 641

  Fly   132 LSTFSNDGTDTM--------------------STAFSISSAMKSIFAQM--EKGTTVTPIVLL-- 172
            :.....:....|                    ..|...:..::.:|.::  .|.::|.|..:|  
pombe   642 ILDIDENKDLNMIENKEAVKKVGGRIVTRIEFLRALQFTYELRKLFIELITSKSSSVHPSSVLTY 706

  Fly   173 ---------------------------------------------QALHRASPQ----------- 181
                                                         |.|.:...|           
pombe   707 LALIPLTLDQVKSGTSSVMDLSSSRELSNLNERSITIDPRAEEQAQGLEQEQGQDEAKSPAEQSS 771

  Fly   182 --------FAQT-GENGTY------------------RQQDANECWAEILKMLQQKL-RPKNQEP 218
                    .|.| ||:.|.                  ||||..||...:|..|:..| |..|.|.
pombe   772 SVNLIDFPMANTNGESQTQPHYFEVSEEEINSSMDLGRQQDVLECIDHVLFQLEASLGRISNSED 836

  Fly   219 SNTVQKRHSSFIDQFFGGTFEVKMSSEEDPDEPSTVTSENFLQLSCFISMDVKYMQSGLKSKMKE 283
            .   ....:..|.:.|.|..:..:      ::.|.....|:   ..|..:.|...:.  |..:.:
pombe   837 R---LGSDNDLIRRLFSGKLKQTL------NDASQGVRSNY---EIFSHLIVDLFEE--KQTLYD 887

  Fly   284 QLVKKSETLGRD-----AKYIRTYLVSRLPAYLTVQFVRFQYK---------------GKE---- 324
            .|....||:..|     |:  |:..::.||..|.:|..|.|:.               |||    
pombe   888 ALDGVFETVNIDMGSETAQ--RSLCITELPIILQLQIQRVQFDRTTGQPFKSNAFVEFGKELSMD 950

  Fly   325 -------GINAKVLK---DIKFPI-------------------DFDAFELCT---PELQNKLCPM 357
                   |..|.:|:   |:|..|                   ..|...:.:   .:.|:...|:
pombe   951 RYVEDTDGKMAPLLQRYWDLKREIINLQKRQQLLLTTNSNLMSSVDTLSILSKWAAQQQDSRLPI 1015

  Fly   358 RSKFKDLEDKKM-----EVDVVKRNEPN--EEKKDVKYEQFWFDDDLGSNNSGYYTLQAVLTHKG 415
            ..|..|:..:::     |||::|:.|.:  ||:..:      ||:.:    |..|.|.||..|:|
pombe  1016 NPKLPDILQEEINNVVAEVDMLKKQEASLKEERTHL------FDNYI----SHSYDLLAVFVHRG 1070

  Fly   416 RSSSSGHYVAWVRS-SGDVWFKFDDDEVSAVATDEILRLSGGGDWHCAYVLLY 467
            : :|.|||..::.. ..:|:.|::|:.|:.|...||...:.|.:.: .|:|.|
pombe  1071 Q-ASFGHYWTYIHDFENNVYRKYNDEYVTVVDESEIFADTTGNNAN-PYMLTY 1121

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp14NP_001260321.1 UBQ 4..73 CDD:214563 11/70 (16%)
UBQ 5..73 CDD:294102 11/70 (16%)
UCH 103..467 CDD:278850 104/535 (19%)
Peptidase_C19A 105..467 CDD:239122 103/533 (19%)
ubp2NP_594208.1 RPT 467..522 CDD:290182
RPT 540..597 CDD:290182 10/67 (15%)
Peptidase_C19J 613..1122 CDD:239131 105/537 (20%)
UCH 613..1121 CDD:278850 104/535 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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