DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cdk5alpha and cdk5r2a

DIOPT Version :9

Sequence 1:NP_001260320.1 Gene:Cdk5alpha / 34385 FlyBaseID:FBgn0027491 Length:472 Species:Drosophila melanogaster
Sequence 2:NP_001017569.1 Gene:cdk5r2a / 550231 ZFINID:ZDB-GENE-050417-22 Length:308 Species:Danio rerio


Alignment Length:361 Identity:135/361 - (37%)
Similarity:196/361 - (54%) Gaps:79/361 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   108 TITNVLDTHNENSVL--KAEKSS--FEKNLKKHSIFINALSWKKLSTSHNKKKIENKNKCANLPT 168
            |:.::..|..:..:|  |.:.:|  .||:||:||:.|:||:||:|..:..|||...|        
Zfish     3 TVLSISPTSRKGGILDEKTDGASGKTEKSLKRHSVLISALTWKRLVAASAKKKSAKK-------- 59

  Fly   169 ACFKAQLLESSFASSSDKNRNIQLHCNRIDEHNQQHCNQHPHPHPHQHQL-----QLQNQHQHQN 228
                                                    .:|:|...|:     ||..::..::
Zfish    60 ----------------------------------------VNPNPPVAQIGNPVDQLNTENLKKS 84

  Fly   229 QNQNQNQNQVQDIREEVMTGPPGKSQNPSKAKDPVKVNNKNSMSNHNKLIQKQPLTLSLPQQVQA 293
            |:.::.:.:...:...|.| .|.||..||:.:: ...|.|..:|     :|:||...|:..    
Zfish    85 QSGSERKTKPGPLAVPVPT-VPDKSLRPSQTQN-ASQNGKQLLS-----VQRQPSNRSIIS---- 138

  Fly   294 SSIQTKNTNQIPRKTVIQASTSELLKCLGMFLHCRCQRLNNFDAGDAVMWLRAVDRSLLLQGWQD 358
                       ||:.::||||.|||:||..|:..||.:|......:.::|.|.||||||:|||||
Zfish   139 -----------PRRVIVQASTGELLRCLSDFMCRRCYKLKELSPNEIILWFRNVDRSLLIQGWQD 192

  Fly   359 VAFINPANVVFVYMLVRELVSGEESKESDLQASVLTCLYLSYSYMGNEISYPLKPFLVEDSKEKF 423
            ..||.|||:||||:|.||.|:.:.|.|.:|||:.||||||:||||||||||||||||||.:||.|
Zfish   193 QGFITPANLVFVYLLCREAVTEDISSEYELQATFLTCLYLAYSYMGNEISYPLKPFLVETNKEVF 257

  Fly   424 WDRCLVIVNKLSDKMLKINAEPGFFTEVFTELKSCG 459
            |:|.|.|::|:|.|||:||::|.||||||.:||:.|
Zfish   258 WERSLRIIDKMSAKMLQINSDPHFFTEVFQDLKNEG 293

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cdk5alphaNP_001260320.1 CDK5_activator 107..458 CDD:281279 134/358 (37%)
cdk5r2aNP_001017569.1 CDK5_activator 13..290 CDD:281279 130/346 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170593205
Domainoid 1 1.000 222 1.000 Domainoid score I2518
eggNOG 1 0.900 - - E1_KOG3932
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 252 1.000 Inparanoid score I3192
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1492547at2759
OrthoFinder 1 1.000 - - FOG0001633
OrthoInspector 1 1.000 - - otm25117
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR23401
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1362
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1312.860

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