DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cdk5alpha and Cdk5r1

DIOPT Version :9

Sequence 1:NP_001260320.1 Gene:Cdk5alpha / 34385 FlyBaseID:FBgn0027491 Length:472 Species:Drosophila melanogaster
Sequence 2:NP_446343.1 Gene:Cdk5r1 / 116671 RGDID:629472 Length:307 Species:Rattus norvegicus


Alignment Length:339 Identity:135/339 - (39%)
Similarity:184/339 - (54%) Gaps:76/339 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   120 SVLKAEKSSFEKNLKKHSIFINALSWKKLSTSHNKKKIENKNKCANLPTACFKAQLLESSFASSS 184
            :.::..|::.:||||:||| |:.|.||::.....|||...|.:    |.:.:     :|:.|..:
  Rat    28 TAVQNSKNAKDKNLKRHSI-ISVLPWKRIVAVSAKKKNSKKAQ----PNSSY-----QSNIAHLN 82

  Fly   185 DKNRNIQLHCNRIDEHNQQHCNQHPHPHPHQHQLQLQNQHQHQNQNQNQNQNQVQDIREEVMTG- 248
            ::|....|.|..:....|....|.|.|...|                              ::| 
  Rat    83 NENLKKSLSCANLSTFAQPPPAQPPAPPASQ------------------------------LSGS 117

  Fly   249 PPGKSQNPSKAKDPVKVNNKNSMSNHNKLIQKQPLTLSLPQQVQASSIQTKNTNQIPRKTVIQAS 313
            ..|.|.:..||..|                                :|.:..|   |::.::|||
  Rat   118 QTGVSSSVKKAPHP--------------------------------AITSAGT---PKRVIVQAS 147

  Fly   314 TSELLKCLGMFLHCRCQRLNNFDAGDAVMWLRAVDRSLLLQGWQDVAFINPANVVFVYMLVRELV 378
            |||||:|||.||..||.||.:....|.|:|||:||||||||||||..||.||||||:|||.|:::
  Rat   148 TSELLRCLGEFLCRRCYRLKHLSPTDPVLWLRSVDRSLLLQGWQDQGFITPANVVFLYMLCRDVI 212

  Fly   379 SGEESKESDLQASVLTCLYLSYSYMGNEISYPLKPFLVEDSKEKFWDRCLVIVNKLSDKMLKINA 443
            |.|...:.:|||.:|||||||||||||||||||||||||..||.||||||.::|.:|.|||:|||
  Rat   213 SSEVGSDHELQAVLLTCLYLSYSYMGNEISYPLKPFLVESCKEAFWDRCLSVINLMSSKMLQINA 277

  Fly   444 EPGFFTEVFTELKS 457
            :|.:||:||::||:
  Rat   278 DPHYFTQVFSDLKN 291

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cdk5alphaNP_001260320.1 CDK5_activator 107..458 CDD:281279 135/339 (40%)
Cdk5r1NP_446343.1 CDK5_activator 20..293 CDD:397388 135/339 (40%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 97..133 11/97 (11%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166351398
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3932
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 237 1.000 Inparanoid score I3298
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1492547at2759
OrthoFinder 1 1.000 - - FOG0001633
OrthoInspector 1 1.000 - - otm44881
orthoMCL 1 0.900 - - OOG6_107211
Panther 1 1.100 - - O PTHR23401
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1362
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1312.760

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