DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hand and Msgn1

DIOPT Version :9

Sequence 1:NP_609370.2 Gene:Hand / 34379 FlyBaseID:FBgn0032209 Length:174 Species:Drosophila melanogaster
Sequence 2:NP_001103021.1 Gene:Msgn1 / 689864 RGDID:1587516 Length:187 Species:Rattus norvegicus


Alignment Length:128 Identity:35/128 - (27%)
Similarity:66/128 - (51%) Gaps:11/128 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 NSVALTCEYS------TMYYNSIYNTSNMFDMKHSESQVQ-QQIYNTSHLGYVPTSNTRI-VKKR 60
            :.|||.|.:|      :..|:| :....:.::.:|....| ..|:....|.....|..:: |::|
  Rat    57 SEVALPCGHSGASTGGSDGYSS-HEAGGLVELDYSMLAFQPSYIHAAGGLKGQKGSKVKMSVQRR 120

  Fly    61 NTANKKERRRTQSINNAFSYLREKIPNVPTD--TKLSKIKTLKLAILYINYLVNVLDGDLDPK 121
            ..|:::|:.|.:::.:|...||..:|.|.:.  ..|:||:|||..|.||..|.::|:|..:|:
  Rat   121 RKASEREKLRMRTLADALHTLRNYLPPVYSQRGQPLTKIQTLKYTIKYIRELTDLLNGGREPR 183

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HandNP_609370.2 HLH 59..110 CDD:278439 18/52 (35%)
Msgn1NP_001103021.1 HLH 119..173 CDD:278439 18/53 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4029
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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