DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hand and Tcf23

DIOPT Version :9

Sequence 1:NP_609370.2 Gene:Hand / 34379 FlyBaseID:FBgn0032209 Length:174 Species:Drosophila melanogaster
Sequence 2:XP_001067558.2 Gene:Tcf23 / 688600 RGDID:1586500 Length:215 Species:Rattus norvegicus


Alignment Length:106 Identity:34/106 - (32%)
Similarity:53/106 - (50%) Gaps:15/106 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 DMKHSE-SQVQQQIYN----TSHLGYVPTSNTRIVKKRNTAN----------KKERRRTQSINNA 77
            |.|.|. ::.:|.:::    ::|.....||..|..:.|.||:          .:||.|.:::..|
  Rat    28 DRKRSRLNRTRQDLWDDTSWSNHRLSRVTSAPRRTRARGTAHGRSEASPENAARERTRVKTLRQA 92

  Fly    78 FSYLREKIPNVPTDTKLSKIKTLKLAILYINYLVNVLDGDL 118
            |..|:..:|.||.||||||:..|.||..||.:|...|..:|
  Rat    93 FLALQAALPAVPPDTKLSKLDVLVLATSYIAHLTRTLGHEL 133

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HandNP_609370.2 HLH 59..110 CDD:278439 23/60 (38%)
Tcf23XP_001067558.2 HLH 80..129 CDD:197674 21/48 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166343466
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4029
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.740

Return to query results.
Submit another query.