DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hand and twist1b

DIOPT Version :9

Sequence 1:NP_609370.2 Gene:Hand / 34379 FlyBaseID:FBgn0032209 Length:174 Species:Drosophila melanogaster
Sequence 2:NP_001017820.1 Gene:twist1b / 550518 ZFINID:ZDB-GENE-050417-357 Length:169 Species:Danio rerio


Alignment Length:73 Identity:39/73 - (53%)
Similarity:51/73 - (69%) Gaps:2/73 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 PTSNTRIVKKRNTANKKERRRTQSINNAFSYLREKIPNVPTDTKLSKIKTLKLAILYINYLVNVL 114
            |.|...:..:|..||.:||:||||:|.||:.||:.||.:|:| |||||:|||||..||::|..||
Zfish    67 PQSFEELQTQRVMANVRERQRTQSLNEAFAALRKIIPTLPSD-KLSKIQTLKLAARYIDFLCQVL 130

  Fly   115 DGD-LDPK 121
            ..| ||.|
Zfish   131 QSDELDSK 138

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HandNP_609370.2 HLH 59..110 CDD:278439 30/50 (60%)
twist1bNP_001017820.1 HLH 76..126 CDD:278439 30/50 (60%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170583777
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5507
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.870

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