DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hand and Lyl1

DIOPT Version :9

Sequence 1:NP_609370.2 Gene:Hand / 34379 FlyBaseID:FBgn0032209 Length:174 Species:Drosophila melanogaster
Sequence 2:NP_001007678.1 Gene:Lyl1 / 304663 RGDID:1359244 Length:278 Species:Rattus norvegicus


Alignment Length:102 Identity:36/102 - (35%)
Similarity:57/102 - (55%) Gaps:7/102 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 YYNSIY-NTSNMFDMKHSESQVQQQIYNTSH--LGYVPTSNTRIVKKRNTANKKERRRTQSINNA 77
            :.||:| ..:..|.: ...|:::::   .||  |..|.....:.|.:|...|.:||.|.|.:|.|
  Rat   108 FLNSVYIGPAGPFSI-FPNSRLKRR---PSHGELDLVDGHQPQKVARRVFTNSRERWRQQHVNGA 168

  Fly    78 FSYLREKIPNVPTDTKLSKIKTLKLAILYINYLVNVL 114
            |:.||:.:|..|.|.||||.:.|:||:.||.:||.:|
  Rat   169 FAELRKLLPTHPPDRKLSKNEVLRLAMKYIGFLVRLL 205

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HandNP_609370.2 HLH 59..110 CDD:278439 23/50 (46%)
Lyl1NP_001007678.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..52
HLH 155..207 CDD:197674 25/51 (49%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 213..278
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4029
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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