DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hand and hlh-16

DIOPT Version :9

Sequence 1:NP_609370.2 Gene:Hand / 34379 FlyBaseID:FBgn0032209 Length:174 Species:Drosophila melanogaster
Sequence 2:NP_492372.2 Gene:hlh-16 / 183973 WormBaseID:WBGene00001960 Length:146 Species:Caenorhabditis elegans


Alignment Length:99 Identity:33/99 - (33%)
Similarity:46/99 - (46%) Gaps:6/99 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    60 RNTANKKERRRTQSINNAFSYLREKI--PNVPTDTKLSKIKTLKLAILYINYLVNV---LDGDLD 119
            ||:.|.:||||...:|:.|..|||.:  ||.....::||..||.||..:|..|.|.   |..:|:
 Worm    42 RNSINSRERRRMHELNDEFETLRECLPYPNEANSRRMSKANTLLLASNWIKQLANANHKLQMELN 106

  Fly   120 PKGGFRAELKPVSRKICSEKKHCLKSEIQNVPLS 153
            ........|....:|:......|.|.: |||..|
 Worm   107 MANAKIDSLMVQLKKVEKPSSKCSKCQ-QNVCFS 139

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HandNP_609370.2 HLH 59..110 CDD:278439 21/51 (41%)
hlh-16NP_492372.2 bHLH_TS 42..96 CDD:381396 22/53 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 42 1.000 Inparanoid score I4152
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.960

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