DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hand and msc

DIOPT Version :10

Sequence 1:NP_609370.2 Gene:Hand / 34379 FlyBaseID:FBgn0032209 Length:174 Species:Drosophila melanogaster
Sequence 2:NP_001096235.1 Gene:msc / 100124790 XenbaseID:XB-GENE-978233 Length:180 Species:Xenopus tropicalis


Alignment Length:70 Identity:30/70 - (42%)
Similarity:46/70 - (65%) Gaps:2/70 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 PTSNTRIVK--KRNTANKKERRRTQSINNAFSYLREKIPNVPTDTKLSKIKTLKLAILYINYLVN 112
            |:.:::..|  :|:.||.:||.|.:.::.|||.|:..:|.||.||||||:.||:||..||.:|..
 Frog    71 PSRSSKDCKQSQRHAANARERARMRVLSKAFSRLKTSLPWVPPDTKLSKLDTLRLASSYIAHLRQ 135

  Fly   113 VLDGD 117
            :|..|
 Frog   136 LLQED 140

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HandNP_609370.2 bHLH_TS_HAND 59..114 CDD:381472 26/54 (48%)
mscNP_001096235.1 bHLH_SF 79..144 CDD:469605 29/62 (47%)

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