DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hand and tcf23

DIOPT Version :9

Sequence 1:NP_609370.2 Gene:Hand / 34379 FlyBaseID:FBgn0032209 Length:174 Species:Drosophila melanogaster
Sequence 2:XP_001342593.4 Gene:tcf23 / 100002924 ZFINID:ZDB-GENE-090806-5 Length:277 Species:Danio rerio


Alignment Length:95 Identity:34/95 - (35%)
Similarity:50/95 - (52%) Gaps:16/95 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 PTSNTRIVKKRNTANK--KERRRTQSINNAFSYLREKIPNVPTDTKLSKIKTLKLAILYINYLVN 112
            ||:::|..|.:.:...  :||.|.:::..||..|:..:|:||.||||||:..|.||..||.:|..
Zfish   153 PTASSRACKSQTSPENAARERSRVRNLRQAFHSLQAALPSVPPDTKLSKLDVLVLATNYIAHLTE 217

  Fly   113 VLDGDLDPKGGF--------RAE-LKPVSR 133
            .||     :||.        |.| |.||.:
Zfish   218 TLD-----QGGMLGDQSVLQRVEYLHPVKK 242

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HandNP_609370.2 HLH 59..110 CDD:278439 20/52 (38%)
tcf23XP_001342593.4 HLH 170..221 CDD:197674 23/55 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.