DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ufd4 and UPL4

DIOPT Version :9

Sequence 1:NP_609369.1 Gene:Ufd4 / 34378 FlyBaseID:FBgn0032208 Length:2727 Species:Drosophila melanogaster
Sequence 2:NP_195908.1 Gene:UPL4 / 831758 AraportID:AT5G02880 Length:1502 Species:Arabidopsis thaliana


Alignment Length:1377 Identity:331/1377 - (24%)
Similarity:545/1377 - (39%) Gaps:359/1377 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly  1513 LSRELEHISDLSAINNSMPAINSSNVSDLATISENLSLT-----ELSKENICRVLTPSYKPAESV 1572
            |..|..|:.:|::.......:.:..:..|..:|...:|.     ||:.....:.:..:|..:.||
plant   323 LINESTHLLNLNSRTTLSQPVYNGVIGMLRKLSSGSALAFRTLYELNIGYSLKEIMSTYDISHSV 387

  Fly  1573 TASQSSSHP----------------DVQSSSPRENDIKNISNIEENNKMNANNSVNKISKDLL-- 1619
                ||:||                ::..:||.|::  .:::.:|:..:|..:.:.:..:|:|  
plant   388 ----SSTHPINACSNQVHEVLKLVIELLPASPVEDN--QLASEKESFLVNQPDLLQQFGRDMLPV 446

  Fly  1620 --------ANLRTSNIAGCPPVTQLST-EALEMIDKMRDGVDMIRNMSNS-----ILSTDTFPVP 1670
                    ||:..|  .||     ||. ..|..:.|..|.|::::|.:.|     |||.....|.
plant   447 MIQVLNSGANVYVS--YGC-----LSAIHKLTCLSKSGDIVELLKNTNMSSVLAGILSRKDHHVI 504

  Fly  1671 CTNVPVGGKKTPK-----------------AQALINPDNANQKQIIVTSEEFPT----------- 1707
            ...:.|......|                 .:||::.|...|.|......:.|.           
plant   505 VVALQVAEVLLEKYRDTFLNSFIKEGVFFAIEALLSSDRGQQNQGSADLSQKPVTKEIVKCLCQS 569

  Fly  1708 --KSSKKPSVTLKPAQQPNAVLSIVDIKE------------------QPISNENVSVPSQMSI-- 1750
              :|....|.|.|..:....||: ..|||                  |.:.|.:|::...|::  
plant   570 FERSLSSSSQTCKIEKDSVYVLA-TRIKEGFFGPEVFNSEKGLTDVLQNLKNLSVALSELMTVPI 633

  Fly  1751 -----------SVPN--LTTTSASEVPSTSEVATHTGLLETFAA-----IARRRTSQGTNIQDNQ 1797
                       |:.|  :...:..|..||.|. ..:|::::.|:     :.:|:.|:|       
plant   634 DAHVLHDEKFFSIWNQIMERLNGRESVSTFEF-IESGVVKSLASYLSNGLYQRKLSKG------- 690

  Fly  1798 IMNAEANVNEHGDQNASGSFLGHSVTSLVKLALSSNFHSGLLSTAQSYPSLSSNNSENIAPS--- 1859
                       |.:..|..|:|.......:|..|....:..|...:...||||..:..|..|   
plant   691 -----------GPECDSLPFIGKRFEVFTRLLWSDGEATSSLLIQKLQNSLSSLENFPIVLSQFL 744

  Fly  1860 NPSNTSAGQQSASTINHTLTMSLTSTSSDSEQVSLEDFLESCRAPALLGDLDDEDDM------DE 1918
            ...|:.|...:....::. .:.:....::.| .||.|:.:.......|..||..|..      .|
plant   745 KQKNSFAAIPNGRCTSYP-CLKVRFLKAEGE-TSLRDYSQDFVTVDPLCYLDAVDQYLWPKVNIE 807

  Fly  1919 DNDEEENEDEYEEVGNTLLQVMVSRNLLTFMDDEAMENRLVGVTKRKSWDDEFVLKRQFSALIPA 1983
            ..|..|.:|:..|..::.||                                   ....|....:
plant   808 PIDSVEAKDQAIECQSSQLQ-----------------------------------STSISCQAES 837

  Fly  1984 FDPRPGRTNVNQTSDLEISPL--GAELPKPQQSGGPETIEQ-----PLLGLKLRGPGIGGIPEVE 2041
            ..|....:..:..|.|:.|.:  ..:||..|.:...||..:     |.|..:|.|        :|
plant   838 SSPMEIDSESSDASQLQGSQVEDQTQLPGQQNASSSETSSEKEDAVPRLLFRLEG--------LE 894

  Fly  2042 IDLSNTDWTIFRAVQELLQCSQLNKLDKFRKIWEPT--------YTIVYREVSPEAQEST----- 2093
            :|.|   .|:::|:          .|.|.:...|.|        :.|.| |.|.:..:|.     
plant   895 LDRS---LTVYQAI----------LLHKLKSESEATNDSKLSGPHNITY-ERSAQLGDSRENLFP 945

  Fly  2094 --CLESEEF-PQTPDVSSKSGASTLSPNSPMHIGFNVADNNLCSVDDVLELLTQINGLNQ----- 2150
              .:|.:|: |....:.:...|..|..:|  |..:           |:|.||..:.|:|:     
plant   946 PGSMEDDEYRPFLSYLFTHRLALRLKGSS--HPPY-----------DILFLLKSLEGMNRFLFHL 997

  Fly  2151 --------------SEIDSDVKEHGVSVLSEDLFISKKITNKLQQQIQDPLVLASNALPNWCENL 2201
                          ..:| |::.. |..:....|:|.|:|.||:||::|...:::..||.|..:|
plant   998 ISLERINAFGEGRLENLD-DLRVQ-VRPVPHSEFVSSKLTEKLEQQLRDSFAVSTCGLPPWFNDL 1060

  Fly  2202 NQSCPFLFPFETRQLYFNCTSFGASRSIVCLQSQRDVTVERQRIPIMSPRRDDHEFRIGRLKHER 2266
            ..|||.||.||.:..||...:||:.:.....|......|..:..|:           .|.|..::
plant  1061 MDSCPCLFSFEAKSKYFRLAAFGSQKIRHHPQHLSSSNVHGEARPV-----------TGSLPRKK 1114

  Fly  2267 VKVPRNEDLLMWAMQVMKTHCNRKSVLEVEFLDEEGTGLGPTLEFYALVAAEIQRSDLCMWL--C 2329
            ....| |::|..|.::|:.:.|:|.|:|||:.:|.|||||||||||.||:...|..||.||.  |
plant  1115 FLACR-ENILESAAKMMELYGNQKVVIEVEYSEEVGTGLGPTLEFYTLVSRAFQNPDLGMWRNDC 1178

  Fly  2330 DDDLGEDTENSTQSAEGNSKPVGYYVNRREHGIFPAPLPQNSEICENVLKYFWFFGVFVAKVLQD 2394
            ...:|:..|:|...|..:             |:||.|. ..:....:||:.|...|..|||.|||
plant  1179 SFIVGKPVEHSGVLASSS-------------GLFPRPW-SGTSTTSDVLQKFVLLGTVVAKALQD 1229

  Fly  2395 MRLVDIPLSTSFLQLLCHNKVLSRNLQKVISDRRNGDLSVVSEDSDIVETCTKLLRTDSNKSNAF 2459
            .|::|:|||.:|.:|:                                                .
plant  1230 GRVLDLPLSKAFYKLI------------------------------------------------L 1246

  Fly  2460 GGILSLENLKEIDPTRYQFLQEMQNLLLRKQSIEFDDTISAEKKHELINELKLQTQNGLEVSLED 2524
            |..||..::..:||...:.|.|:|.|:.||:........|...|.:|       :.:|.::  ||
plant  1247 GQELSSFDIHFVDPELCKTLVELQALVRRKKLFAEAHGDSGAAKCDL-------SFHGTKI--ED 1302

  Fly  2525 LALTFTYLPSSSIYGYTQAELLPNGSSVNVTIDNLEAYCELLMNFILQDGIAQQMKAFSDGFNEV 2589
            |.|.|. ||     |||..:|.|..::..|.:||||.|.:.::|..:.:||.:|::||..|||:|
plant  1303 LCLEFA-LP-----GYTDYDLAPYSANDMVNLDNLEEYIKGIVNATVCNGIQKQVEAFRSGFNQV 1361

  Fly  2590 FPLKKLAAFTPSEARMMICGEQFPHWSREDIISYTEPKLGYNKDSPGFQRFVNVLLSMSGDERKA 2654
            |.::.|..|...|...|:||| ...:|..:::.:.:...||...||..:..:.:|.....::::|
plant  1362 FSIEHLRIFNEEELETMLCGE-CDLFSMNEVLDHIKFDHGYTSSSPPVEYLLQILHEFDREQQRA 1425

  Fly  2655 FLQFTTGCSSLPPGGLANLHPRLTVVRK--VDAGVGSYPSVNTCVHYLKLPDYPTEEIMKERLLT 2717
            ||||.||...||.||||:|.|:||:|||  .|:.....|||.||.:|||||.|.::|.|||:|:.
plant  1426 FLQFVTGSPRLPHGGLASLSPKLTIVRKHGSDSSDTDLPSVMTCANYLKLPPYSSKEKMKEKLIY 1490

  Fly  2718 A-TKEKG-FHLN 2727
            | |:.:| |||:
plant  1491 AITEGQGSFHLS 1502

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ufd4NP_609369.1 ANK repeat 393..420 CDD:293786
ANK 396..509 CDD:238125
ANK repeat 422..453 CDD:293786
ANK repeat 455..484 CDD:293786
F5_F8_type_C 1173..1298 CDD:329041
MIB_HERC2 1333..1389 CDD:310955
DamX 1576..>1725 CDD:330571 40/210 (19%)
HECTc 2265..2725 CDD:238033 153/465 (33%)
UPL4NP_195908.1 ARM 156..264 CDD:237987
armadillo repeat 156..181 CDD:293788
armadillo repeat 189..226 CDD:293788
armadillo repeat 230..263 CDD:293788
HEAT repeat 277..303 CDD:293787
HECTc 1114..1500 CDD:238033 153/464 (33%)
HECTc 1136..1497 CDD:214523 146/438 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5021
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D34110at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm2761
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45670
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
65.880

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