DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ufd4 and Herc6

DIOPT Version :9

Sequence 1:NP_609369.1 Gene:Ufd4 / 34378 FlyBaseID:FBgn0032208 Length:2727 Species:Drosophila melanogaster
Sequence 2:NP_080268.1 Gene:Herc6 / 67138 MGIID:1914388 Length:1003 Species:Mus musculus


Alignment Length:891 Identity:191/891 - (21%)
Similarity:298/891 - (33%) Gaps:313/891 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly  1994 NQTSDLEISPLGAELPKPQQSG--GPETIEQPLLGLKLRGPGIGGIPEVEIDLSNTDWTIFRAVQ 2056
            |.:..|:.||         :||  ||:.||           ||||      .:|..:...:..:.
Mouse   262 NSSGQLQPSP---------RSGQRGPQLIE-----------GIGG------RVSQIECASYHTIA 300

  Fly  2057 ELLQCSQLNKLDKFRKIWEPTYTI--VYREVSPEAQESTCLESEEFPQTPDVSSK---SGASTLS 2116
            .:....|:..|.:     .|::|.  .::|...|..:.|||.:.|  ...|:..|   :||    
Mouse   301 YVYTTGQVVSLGR-----GPSHTSNPTHQEAPAENSDITCLLAAE--DLVDIEVKDIFAGA---- 354

  Fly  2117 PNSPMHIGF----NVADNNLCSVDDVLELLTQINGLNQS-------------------------- 2151
                 |..|    .|:......|.  :::|.:|..:|||                          
Mouse   355 -----HANFVTTRRVSHTRSTGVS--MKILPEIIRINQSLVKKWRAANKRKDREGAKREISLIFS 412

  Fly  2152 -------------------EIDSDVKEHGVSVLSEDLFISKKITNKLQQQIQDPLVLASNALPNW 2197
                               .||.|:|      |:.|:|  ||:|.:                 .|
Mouse   413 SSACLTASFLKKRDAGENNLIDVDLK------LARDVF--KKLTTE-----------------KW 452

  Fly  2198 CENLNQSC---------PFLFPFETRQLYF----NCT-----------SFGASRSI--------- 2229
            ..:|..:|         |:..|.:...|.|    .|:           :|..:::|         
Mouse   453 ISSLITTCLEEYLLRDLPYSSPHQEALLVFLLLPECSIMQDPKNWKTLAFEFAKAIHKMGPQSLA 517

  Fly  2230 ---VCLQ----SQRDVTVERQRIPIMSPRRDDHEFRIGRLKHE---RVKVPRNEDLLMWAMQVMK 2284
               .|..    |..::.|:..:..|:|      :.:.|....:   .:||     ||....:|.|
Mouse   518 FLRTCWASLEVSSLNILVQMLKKAIIS------QIQYGVATEQYITNIKV-----LLEVIKEVHK 571

  Fly  2285 THCNRKSVLEVEFLDEEGTGLGPTLEFYALVAAEIQRSDLCMWLCDDDLGEDTENSTQSAEGNSK 2349
            .:|   .:.|..|:..|.:|:   ..|    .||..|    |::..:|| :.||:|......:. 
Mouse   572 ANC---QLPESAFIINELSGI---FNF----DAEAGR----MFIRHNDL-DCTESSDMVVFSDF- 620

  Fly  2350 PVGYYVNRREHGIFPAPLPQNSEI--CENVLKYFWFFGVFVAKVLQDMRLVDIPLSTSFL----- 2407
                        :|...||...::  |::.:|.......|..|:.....|: :.:..|.|     
Mouse   621 ------------LFVFDLPSKIKLMKCDSFVKLMSEVMAFPEKMSSPPYLI-LKVRRSHLVEDTL 672

  Fly  2408 -QLLCHNKVLSRNLQKVISDRRNGDLSVVSEDSDIVET----CTKLLRTDS-------------- 2453
             ||   .:|...:|:|.:|   .|.::.:..::..|.:    |.....||.              
Mouse   673 RQL---RQVEDFDLRKQLS---VGFINEIRPEAGGVSSEFFHCIFEEMTDPKYEMFIYPEKGSSM 731

  Fly  2454 --------NKSNAF-GGI---LSLENLKEID---PTRYQFLQEMQNLLLRKQSIEFDDTISAEKK 2503
                    .||:.| .||   |||.|||.|:   |     |...:.||.:|.|:|.         
Mouse   732 WFPVNPKFEKSSYFLFGILCGLSLHNLKVINLPFP-----LALYKKLLNQKPSLED--------- 782

  Fly  2504 HELINELKLQTQNGLEV-------SLEDLALTFTYLPSSSIY-GYTQAELLPNGSSVNVTIDNLE 2560
               :.||.|.....|:.       .:|:|.:.|      ||| .....:|:|:|.||.|...|..
Mouse   783 ---LKELSLPLGRNLQEVLNCEAGDIEELHMYF------SIYWDQKDVDLIPDGISVPVNETNKR 838

  Fly  2561 AYCELLMNFILQDGIAQQMKAFSDGFNEVFPLKKLAAFTPSEARMMICGEQFPHWSR-EDIISYT 2624
            .|....:::|....|....:.|..||.:|.....:..|.|.|....|.|.....|.: |:...| 
Mouse   839 DYVSKYVDYIFNISIKTIYEEFHRGFYKVCNWDIIRQFQPEELMTAIIGNATCDWKQFENNSKY- 902

  Fly  2625 EPKLGYNKDSPGFQRFVNVLLSMSGDERKAFLQFTTGCSSLPPGGLANLHPRLTVVRKVDAGV-- 2687
              |.||:|..|....|......::.||:|.||.|.|||..|...||.|            .|:  
Mouse   903 --KDGYDKSHPTILLFWKAFHDLTLDEKKKFLLFLTGCDRLHVKGLQN------------EGIVF 953

  Fly  2688 --------GSYPSVNTCVHYLKLPDYPTEEIMKERLLTA-TKEKGF 2724
                    ...|...||...|.||.|.:...|||.|..| ....||
Mouse   954 RCSETFSEEDNPRSLTCHRMLDLPKYSSMRRMKEALQVAINNSTGF 999

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ufd4NP_609369.1 ANK repeat 393..420 CDD:293786
ANK 396..509 CDD:238125
ANK repeat 422..453 CDD:293786
ANK repeat 455..484 CDD:293786
F5_F8_type_C 1173..1298 CDD:329041
MIB_HERC2 1333..1389 CDD:310955
DamX 1576..>1725 CDD:330571
HECTc 2265..2725 CDD:238033 127/524 (24%)
Herc6NP_080268.1 RCC1 1 40..91
RCC1 40..89 CDD:278826
RCC1 2 92..144
RCC1 92..142 CDD:278826
RCC1 145..195 CDD:278826
RCC1 3 146..197
RCC1_2 183..211 CDD:290274
RCC1 4 199..252
RCC1_2 237..266 CDD:290274 1/3 (33%)
RCC1 5 253..303 15/66 (23%)
RCC1 253..300 CDD:278826 15/63 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 261..281 8/27 (30%)
chaperonin_like <570..>652 CDD:295468 22/109 (20%)
HECTc 658..999 CDD:238033 97/385 (25%)
HECTc 682..999 CDD:214523 91/357 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5021
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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