DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ufd4 and wwc3

DIOPT Version :9

Sequence 1:NP_609369.1 Gene:Ufd4 / 34378 FlyBaseID:FBgn0032208 Length:2727 Species:Drosophila melanogaster
Sequence 2:NP_001103940.1 Gene:wwc3 / 566492 ZFINID:ZDB-GENE-070209-229 Length:1148 Species:Danio rerio


Alignment Length:1288 Identity:237/1288 - (18%)
Similarity:422/1288 - (32%) Gaps:467/1288 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly  1131 DEEGLLFYIGSNAKTCDWVNPAQYGLVQVTSSE--GKTLPYGKLEDILSRDSISLNCHTKDNKKA 1193
            |.:|.:|||..|.:...|::|.......:|.::  |..||.|                       
Zfish    26 DYDGRVFYIDHNTRQTSWIDPRDRITKPLTFADCVGDELPLG----------------------- 67

  Fly  1194 WFAI---DLGVYIIPTAYTLRHARGYGRSALRNWLLQGSKDGSTWTTLSTHVDDKSLVEPGSTAT 1255
            |..:   .:|||.|                                   .|::..:.:|...| .
Zfish    68 WEVVYDQQVGVYYI-----------------------------------DHINKTTQIENPRT-Q 96

  Fly  1256 WPINCATDDSVWYRHIRIQQNGRNASGQTHYLSLSGFEIYGRVV----GVADDIGKSVK------ 1310
            |.   ...:.:...::.:.|...||..:.:.:.....|:..:.:    .:..|..:|:.      
Zfish    97 WR---QEQERMLKEYLVVAQEALNAKKEMYQIKQQRLELAQQEMQLFNQLTQDDNRSITSSHSGS 158

  Fly  1311 -----------EAEAKTRRER--------RQIRAQLKHMTTGARVIRGVD---------WRWEEQ 1347
                       :||...||||        .|:|.:|::...|...::.:|         ::.:|.
Zfish   159 SSNAKYDPDQIKAEIACRRERLSRLKQELAQMRQELQYKEMGVETLQEIDRKMSSSQTNYKLDEA 223

  Fly  1348 DGCAEGTITGEIHNGWIDVKWDHGVRNSYRMGAEGKYD-------LKLADCEYLSAFDGN-QSMG 1404
            .     .|..|:.:          ::.:...|.:.:.|       |.|..|:.::....| :|:.
Zfish   224 Q-----AIFSELRS----------IKKAISTGEKERQDLIQSLAKLTLNFCDSINEVTNNAESLA 273

  Fly  1405 SASTAAKPSEKGGNT-LTSRKSSSTPSL-----------PEATEKNQNPEGASNQTVSADNLAWK 1457
            .:.:..:.::.|..| |.....|...||           .||.:|..:   ..:|....|:.:|.
Zfish   274 DSCSVQQYTDAGCQTDLMGEFGSQESSLLADRVKLSWQYEEAKKKMSS---IQHQLAQLDSESWS 335

  Fly  1458 ---------------QTVETIAENVFASAKTQIISNQLAMNTSSSR----EARAKH--KESGTNQ 1501
                           :..||:.:.:...::.|..|:.|.......|    |.:..|  :..|.||
Zfish   336 GRAEADRDWDCLQLLREKETLLQELTLLSQQQHSSDTLLQLQEEKRRLQDEVQRAHSAQSQGANQ 400

  Fly  1502 ----MHKDNISGPSPLSRELEHISDLSA-INNSMPAINSSNVS--------DLATISENL----- 1548
                ..|.|:     |.|:||..:.::. :::.:.::::||::        .||:...:|     
Zfish   401 RILLQEKRNV-----LMRQLEEATRITTYLHSQLKSLSASNLTVSSSSSRGSLASSRGSLASSRG 460

  Fly  1549 SLTELS------------KENICRVLTPSYK---PAESVTASQSSSHPDVQSSSPRENDIKNISN 1598
            ||:.:|            .|....||.||::   |.|| .:|.|:..|.....:|          
Zfish   461 SLSSVSFTDIYGLPQYDRTEGSSDVLDPSFRYLLPLES-HSSGSAYGPKRSHDTP---------- 514

  Fly  1599 IEENNKMNANNSVNKISKDLLANLRTSNIAGCP--------PVTQLSTEALEMIDK--MRDGVDM 1653
             :....:::.:|::.:|.       .|:....|        |:.|::.|.:|:..:  :.:|   
Zfish   515 -QSLTSLSSRSSLSSLSP-------PSSPMDTPYHSAPQDCPLAQMTEEYMEVASRGLLAEG--- 568

  Fly  1654 IRNMS----NSILSTD-TFPVPCTNVPVGGKKTPKAQALINPDNANQKQIIVTSEEFPTKSSKKP 1713
            :|..|    ::.||.| ...:..|...:.||.        :.|.|.|.....|......||:.: 
Zfish   569 LRTQSQAQQHTTLSGDGEVGIAATAHLLEGKS--------HRDAALQGTHSSTGVTLRCKSASR- 624

  Fly  1714 SVTLKPAQQPNAVLSIVDIKEQPISNENVSVPSQMSISVPNLTTTSASEVPSTSEVATHTGLLET 1778
              |.:.|::.:|.:           ||:|                          :||.:|:   
Zfish   625 --TSRRARRVSAGV-----------NEDV--------------------------LATDSGV--- 647

  Fly  1779 FAAIARRRTSQGTNI---QDNQIMNAEANVNEHG---DQNASGSFLGH--SVTSLVKLAL----- 1830
            |.|.:|.||.:...:   ||..:..:|....:.|   |.| |...|.|  .:.:|.|.::     
Zfish   648 FEAWSRSRTEESEEVSFAQDVTVAVSEPVHIQIGLLYDSN-SRFLLLHVLQMRNLSKASIRDRWK 711

  Fly  1831 -----------SSNFHSGLLSTAQSYPSLSSNNSENIAPSNPSNTSAGQQSASTINHTLTMSLTS 1884
                       ||...:.....||...||.|.|.....|     .|.|...|    |.|..||::
Zfish   712 VFVKVHVLPMDSSRPCTYYCCKAQEPQSLLSFNESFRIP-----LSVGGPGA----HALQFSLST 767

  Fly  1885 TSS-------DSEQVSLEDFLESCRAPALLGDLDDEDDMDEDN--------------DEEENEDE 1928
            ...       .|.||||.|.:.|  ...|...|..:....|::              ||||.::|
Zfish   768 LGPLAQEELLGSAQVSLTDCVGS--TEMLFQWLKVQFHSTENHRPEHRRLSQPNRIMDEEEEKNE 830

  Fly  1929 YEEVGNTLLQVMVSRNLLTFMDDEAMENRLVGVTKRKSWDDEFVLKRQFSALIPAFDPRPGRTNV 1993
                |...|:|.|..:|      |.|:..|     ::| ::|...|.:           ||....
Zfish   831 ----GQGKLEVSVVSHL------EEMKKEL-----QRS-EEELERKEE-----------PGEAVS 868

  Fly  1994 NQTSDLEISPLGAE------LPKPQQSGGPETIEQPLLGLKLRGPGIGGIPEVEIDLSNTDWTIF 2052
            .::...|....|..      :|.|:               .|.|.||                ..
Zfish   869 ERSWQAESVDSGCSNSTAFVIPCPE---------------SLCGEGI----------------CL 902

  Fly  2053 RAVQELLQCSQLNKLDKFRK-------IWEP------TYTIVYREVSPEAQESTCLESEEFPQTP 2104
            .:.:..||.::.|.:.|..|       ..||      ..|..:...||..:.||.:.|:.|  :|
Zfish   903 TSGRRCLQPAERNPIIKVDKATNTEGVFAEPMRMRPKERTGRWGHSSPFMRSSTIVRSQTF--SP 965

  Fly  2105 DVSSK---------SGASTLSPNSPMHIGFNVADNNLCSVDDVLELLTQINGLNQS--------- 2151
            ...|:         |.:|||...||.             :.:.||..| :....||         
Zfish   966 GARSQYVCRLYRSDSDSSTLPKKSPF-------------IRNTLERRT-LRYKQQSHRSSLAEQP 1016

  Fly  2152 -------EIDSDVKEHGVSVLSEDLFISKKITNKLQQQIQDPLVLASNALPNW 2197
                   |:|..........|:|:|...:::..:|::.:|.|...|.  ||:|
Zfish  1017 TRTSLDLELDLQACRTRQRQLTEELAALRELKLRLEEPMQGPRGPAD--LPHW 1067

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ufd4NP_609369.1 ANK repeat 393..420 CDD:293786
ANK 396..509 CDD:238125
ANK repeat 422..453 CDD:293786
ANK repeat 455..484 CDD:293786
F5_F8_type_C 1173..1298 CDD:329041 13/127 (10%)
MIB_HERC2 1333..1389 CDD:310955 8/71 (11%)
DamX 1576..>1725 CDD:330571 28/163 (17%)
HECTc 2265..2725 CDD:238033
wwc3NP_001103940.1 WW 17..46 CDD:278809 7/19 (37%)
WW 64..93 CDD:278809 10/86 (12%)
C2_Kibra 677..800 CDD:176062 33/134 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5021
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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