DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ufd4 and herc5.1

DIOPT Version :9

Sequence 1:NP_609369.1 Gene:Ufd4 / 34378 FlyBaseID:FBgn0032208 Length:2727 Species:Drosophila melanogaster
Sequence 2:XP_017211386.1 Gene:herc5.1 / 559981 ZFINID:ZDB-GENE-090311-56 Length:884 Species:Danio rerio


Alignment Length:996 Identity:187/996 - (18%)
Similarity:321/996 - (32%) Gaps:340/996 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly  1814 SGSF--LGHSVTSLVKLALSSNFHSGLLSTAQSYPSLSSNNSENIAPSNPSNTSAGQQSASTINH 1876
            ||.|  |||:       :.....|..|::              .:..|..|..:.|:      ||
Zfish   141 SGGFGQLGHN-------SFKDEHHPRLVA--------------ELWGSKVSQVTCGR------NH 178

  Fly  1877 TLTMSLTSTSS----------------DSEQVSLEDFLESCRAPALLGDLDDEDDMDEDNDE--- 1922
            |    |.||:|                :.|||.     :|...|.        |...|.|||   
Zfish   179 T----LVSTASPKLIYSFGCGMQGQLGNGEQVK-----QSVPLPV--------DQPTEYNDEYTI 226

  Fly  1923 -----EENED---EYEEVGNTLLQVMVSRNLLTFMDDEAMENRLVGVTKRKSWDDEFVLKRQFSA 1979
                 .||..   .::|:||. .....:|.::|| |:..:|....|...||:..|   ||:.||:
Zfish   227 QKLVAGENHSFALYFKELGNE-ANPDPTRGIMTF-DNGMIEQCECGKDPRKAIKD---LKKVFSS 286

  Fly  1980 LIPAFDPRPGRTNVNQTSDLEISPLGAELPKPQQSGGPETIEQPLLGLKLRGPGIGGIPEVEIDL 2044
                                 .:.|.....|.:..|..:|.|: ..||..      |:.|..|..
Zfish   287 ---------------------AASLNGSFLKTRHDGHYQTSEE-YCGLDF------GLVESSIAT 323

  Fly  2045 SNTDWTIFRAVQELLQCSQLNKLDKFRKIWEPT-------YTIVYREVS-----PEAQESTCLES 2097
            .:.:..:...|.::||.|.|..|:.     .||       |.::...:|     .:|:.:..|.|
Zfish   324 LSRNERLISTVLKVLQESLLPTLNP-----NPTGEESLRLYILLPELISHLKSEQKAELTEALAS 383

  Fly  2098 E--------------EFPQTPDVSSKSGASTLSPNSPMHIG-------FNVADNNLCSVDDVLEL 2141
            :              .:.:.||...|:........|....|       .|||..::....::|:.
Zfish   384 KILNLSPAALRVLEIYWSKLPDDWLKNLVKLFKKASAKFFGRIIVENVNNVAKTHMLKFVEILQR 448

  Fly  2142 LTQINGLNQSEIDSDVKEHGVSVLSEDLFISKKITNKLQQQIQDPLVLASNALPNWCENLNQSCP 2206
            :.|:    ....:.::|:.        .||..::.|.|.      ::...||      ::|.:.|
Zfish   449 VYQV----CCSANRNIKKR--------YFIIHEVNNLLD------VLQTMNA------DVNNNWP 489

  Fly  2207 FLFPFETRQLYFNCTSFGASRSIVCLQSQRDVTVERQRIPIMSPRRDDHEFRIGRLKHE------ 2265
                      :||.|.     .|..|::||:...|..|.....|...:.|.:...:::.      
Zfish   490 ----------WFNLTG-----QIHALEAQRNAYEETFRKLTSFPCIFNLEAKCSYMRNRVWKGRF 539

  Fly  2266 RVKVPRN---EDLLMWAMQVMKTHCNRK--SVLEVEFLDEEGTGLGPTLEFYALVAAEIQRSDLC 2325
            .:.|.|.   ||.|.......:.|...|  |:|..|.:.:.               .::.:.|..
Zfish   540 ELTVRRTALLEDCLCLLNPGTQQHLRDKWLSILFTENVSKR---------------TDVHKRDFF 589

  Fly  2326 M----WLCDDDLGEDTENSTQSAEGNSKPVG--YYVNRREHGI-FPAPLPQNSEICENVLKYFWF 2383
            :    .|||                   |..  :..|..|..| |||.|....:      ||| .
Zfish   590 LNVFKELCD-------------------PASQLFMYNDNETMIWFPAKLTVEKK------KYF-L 628

  Fly  2384 FGVFVAKVLQDMRLVDIPLSTSFLQLLCHNKVLSRNLQKVISDRRNGDLSVVSEDSDIVETCTKL 2448
            ||:.......:..:|::|...:..:.|.:.|.                                 
Zfish   629 FGILCGLAFNNSSVVNLPFPLALFKKLLNIKP--------------------------------- 660

  Fly  2449 LRTDSNKSNAFGGILSLENLKEIDPTR---YQFLQEMQNLLLRKQSIEFDDTISAEKKHELINEL 2510
                           |||:..|.:|..   .|::.|..|.:|.:.|                   
Zfish   661 ---------------SLEDFIEFNPVHGRSLQYILEYSNDVLEESS------------------- 691

  Fly  2511 KLQTQNGLEVSLEDLALTFTYLPSSSIYGYTQAELLPNGSSVNVTIDNLEAYCELLMNFILQDGI 2575
                                 ||.:.|:..::.:|.|.....::|..|...:.:..::.|....:
Zfish   692 ---------------------LPLTIIWSGSELDLDPAEPEQHITTSNRTKFVDEYVDHIFNQSV 735

  Fly  2576 AQQMKAFSDGFNEVFPLKKLAAFTPSEARMMICGEQFPHWSREDIISYTEPKLG-YNKDSPGFQR 2639
            .:..:.|..||......:.:..|.|.|.|.::.|.:...|   :|:.......| :|.|.|....
Zfish   736 KEAFEEFRRGFFRGCEKRLVEMFEPEELRGVLVGNEEYDW---NILKQNTTYEGVFNADHPVIIS 797

  Fly  2640 FVNVLLSMSGDERKAFLQFTTGCSSLPPGGLANLHPRLTVVRKVDAGVGSYPSVNTCVHYLKLPD 2704
            |..|...::.:|:|:||.|.||...:|..|::.:..|:|  ...::.....|...||...|:||.
Zfish   798 FWEVFDDLTPNEKKSFLLFLTGFERVPILGMSAVKMRVT--HLANSTEDHLPETLTCHSLLQLPK 860

  Fly  2705 YPTEEIMKERLLTATKEK-GF 2724
            |...|.::.:::.|...| ||
Zfish   861 YEKRETLRAKVIEAISHKRGF 881

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ufd4NP_609369.1 ANK repeat 393..420 CDD:293786
ANK 396..509 CDD:238125
ANK repeat 422..453 CDD:293786
ANK repeat 455..484 CDD:293786
F5_F8_type_C 1173..1298 CDD:329041
MIB_HERC2 1333..1389 CDD:310955
DamX 1576..>1725 CDD:330571
HECTc 2265..2725 CDD:238033 88/483 (18%)
herc5.1XP_017211386.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5021
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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