DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ufd4 and ctrip

DIOPT Version :9

Sequence 1:NP_609369.1 Gene:Ufd4 / 34378 FlyBaseID:FBgn0032208 Length:2727 Species:Drosophila melanogaster
Sequence 2:NP_001189170.1 Gene:ctrip / 40596 FlyBaseID:FBgn0260794 Length:3140 Species:Drosophila melanogaster


Alignment Length:2972 Identity:563/2972 - (18%)
Similarity:930/2972 - (31%) Gaps:1172/2972 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 LLEWLSMGQGDERDMQLIALEQLCMLLLMSDNVDRCFESCPPRTFLPALCKIFLDELAPE---NV 70
            ||:.|   |..:...||.|..::|.:|:|.:  :......|.:..:|||.::    |..|   ::
  Fly  1088 LLQGL---QSHDESQQLQAAIEMCQMLVMGN--EDTLAGFPIKQVVPALIQL----LRMEHNFDI 1143

  Fly    71 LEVTARAITYYLDVSAECTRRIVSIDGAIKAICNHLVVADLSSRTSRDLAEQCIKVLELICTREA 135
            :....||:.|.|:.....:..:|.   |:......|.|..     ..|:|||.:..||::..|..
  Fly  1144 MNNACRALAYMLEALPRSSGTVVE---AVPVFLEKLQVIQ-----CMDVAEQSLSALEILSRRHN 1200

  Fly   136 GAVFEGGGLNCVLSFIRDCGSQVHKDTLHSAMSVVSRLCTKVEPNT-PCIQNCVESLSTLLQHED 199
            .|:.:..|::..|::: |..|.|.:   .:|:::.:..|..:.|.. ..:...:..|:.||..:|
  Fly  1201 KAILQANGISACLTYL-DFFSIVAQ---RAALAIAANCCLNMHPEEFHFVAESLPLLARLLSQQD 1261

  Fly   200 PMVSDGALKCFASVADRFTRKWVDPAPLAEYGLTTELLKRLQSVGGNTHSSLTAAGTQPTSSSQP 264
            .       ||..||...|.|                |::..|..|...                 
  Fly  1262 K-------KCIESVCSAFCR----------------LVESFQHDGQRL----------------- 1286

  Fly   265 AATTNSDAINENVAGTATISNSTK-VKSSDAAASPQSISTTISLLSTLCRGSPSITHDILRSQLA 328
                      :.:|....:.|..: :..:.|..:..:.:..:.:||.:|...|.:...:||:.:|
  Fly  1287 ----------QQIASPDLLKNCQQLLLVTPAILNTGTFTAVVRMLSLMCCSCPDLAISLLRNDIA 1341

  Fly   329 DALERALQGDERCVLDCMRFADLLLLLLFEGRQALNRGSNNPNQ--------GQLAPR-PRRNNT 384
            ..|...|.|:...........:|:              |.:|::        |:|.|| |     
  Fly  1342 ATLLYLLTGNAEPAAASATHVELI--------------SRSPSELYELTCLIGELMPRLP----- 1387

  Fly   385 NTDRTHRQLIDCIRSKDSEALREAIESGGIDVNCMDDVGQTLLNWASAFGTLEMVEYLCEKGADV 449
                     :|.|.:.||...|..:       |..|.|     :|          ::..::|:..
  Fly  1388 ---------LDGIFAVDSLLDRPTL-------NTQDQV-----HW----------QWRDDRGSWH 1421

  Fly   450 NKGQRSSSLHYAA-----------CFGRPAIAKILLKFGAYPDLRDEDGKT-PLDKARERLDDGH 502
            |.....|.|..||           .|||    ...:.|.|...:.::.|.| |:.:   ||:  |
  Fly  1422 NYSTIDSRLIEAANQSSEDEISLSTFGR----TYTVDFHAMQQINEDTGTTRPVQR---RLN--H 1477

  Fly   503 REVAAILQSPGEWMS---------------------------------PDHSL-LNK-------D 526
            ..||.:  |.|:.::                                 |.:|: ||:       |
  Fly  1478 NYVAPM--SAGQDLTTTSAGSAAAGGASTSAAAAAASSNNNNNNNNNPPGNSVNLNQVKRRPSLD 1540

  Fly   527 GKKYTLMEPRGDPEMAPIYLKVLLPIFCRTFLGSMLGSVRRASLALIKKIVQYAYPTVLQSLSET 591
            .:...|.|.||   :|..::|.:..:....:..|...:||...|..:.::|.||.|.:|:.:  .
  Fly  1541 ARIACLKEERG---LAADFIKHIFNVLYEVYSSSAGPNVRYKCLRALLRMVYYATPELLRQV--L 1600

  Fly   592 SFSEDAASTSGQNGGNLLIEVIASVLDNEDDGDGHLIVLNIIEEIMCKTQEEFLDHFARLGVFAK 656
            .:...::..:|..|.|.|..|:.:              |.:.|.:|.:..:.|..||.|.||..:
  Fly  1601 KYQLVSSHIAGMLGSNDLRIVVGA--------------LQMAEILMRQLPDVFGTHFRREGVIYQ 1651

  Fly   657 VQALMDTDAEELYVQLPGTVEEPAAAQRSSTSVVVAPRPTSDDPMEDAKEILQGKPYHWREWSIC 721
            ...|.|.:             .|..|..|       |:|.|                        
  Fly  1652 FTQLTDPN-------------NPICANPS-------PKPLS------------------------ 1672

  Fly   722 RGRDCLYVWSDSVALELSNGSNGWFRFIIDGKLATMYSSGSPENGNDSSENRGEFLEKLMRARSC 786
                                                 ::.:|      :.|.|            
  Fly  1673 -------------------------------------ATATP------TANAG------------ 1682

  Fly   787 VIAGVVSQPILPTASALRLVVGNWVLQSQKTNQLQIHNTEGHQVTVLQDDLPGFIFESNRGTKHT 851
               |..|.|    |||               |.||::              |.|:          
  Fly  1683 ---GSQSAP----ASA---------------NSLQVN--------------PFFM---------- 1701

  Fly   852 FSAETVLGPDFASGWSTAKKKRNKSKTEGQKFQVRNLSREIYNKYFKSAQIIPRGAVAILTDIVK 916
                     |.|.|.|:|....:.||  .|.:.|::.|..: |....||:..|.||:...:....
  Fly  1702 ---------DSAPGLSSASTTPSSSK--HQSYSVKSFSHAM-NALTASAKGTPSGALDATSSSTT 1754

  Fly   917 QIELSFEEQHMAPNGNWETTLTDALMKLSQLIHEDGVVSAYEMHSSGLVQALVAVLSVNHWETNS 981
            ....::...  ||:.:                  .|..:||.:...|..:..|      |::  .
  Fly  1755 AGGYNYSSS--APSSS------------------SGAPAAYFVTQQGDPRQYV------HFQ--Q 1791

  Fly   982 PRCKRNKMQKQRVSVFKKCILEDNVE-------SATNKPRTKSTASILIQKLVSVLESTEKLPVY 1039
            |.......|::        :|...|:       ....:|..:..|.:       ||.||......
  Fly  1792 PAVPAPPPQQE--------LLPSGVQQQGQQVPQVIYQPHHQQPAHL-------VLASTSSGAAS 1841

  Fly  1040 LYDSPCTGYSLQILQKRLRFRLERAECESTLFDRSGRTLKMEPLATIGQLSKYLLKMVAKQWYDL 1104
            ...|..:..|...||.::...|:|...........||.                           
  Fly  1842 SSSSSSSSSSASALQHKMTDMLKRKAPPKRKSQSGGRA--------------------------- 1879

  Fly  1105 DRSTYFYLKKIREHRTATVFTHSFDFDEEGLLFYIGSNAKTCDWVNPAQYGLVQV-TSSEGKTLP 1168
                     |.|:...|                           |.||..|.... .||.|..  
  Fly  1880 ---------KSRQEDAA---------------------------VAPAGSGPGGAPPSSSGSA-- 1906

  Fly  1169 YGKLEDILSRDSISLNCHTKDNKKAWFAIDLGVYIIPTAYTLRHARGYGRSALRNWLLQGSKDGS 1233
               :.::|||                 |..||             .|.|..:..|   .|...||
  Fly  1907 ---MHELLSR-----------------ATSLG-------------SGNGGRSTPN---SGGGSGS 1935

  Fly  1234 TWTTLSTHVDDKSLVEPGSTATWPINCATDDSVWYRHIRIQQNGRNASGQTHYLSLSGFEIYGRV 1298
            :          ||....|:::    |..:..|.:...:...:.||    |||             
  Fly  1936 S----------KSRFNAGNSS----NAGSSKSSFLASLNPARWGR----QTH------------- 1969

  Fly  1299 VGVADDIGKSVKEAEAKTRRERRQIRAQLKHMTTGARVIRGVDWRWEEQDGCAEGTITGEIHNGW 1363
                            :......|...|..|         |:    .:..|.:..|.:|.     
  Fly  1970 ----------------QNHHHHHQQSQQQHH---------GL----SKDSGNSNSTGSGS----- 2000

  Fly  1364 IDVKWDHGVRNSYRMGAEGKYDLKLADCEYLSAFDGNQSMGSASTAAKPSEKGGNTLTSRKSSST 1428
                   |...:|.:...|             |..|...:.:|:.||..|          ||.|.
  Fly  2001 -------GAGLAYTVSQHG-------------AGSGAGGLNAAAVAASIS----------KSISH 2035

  Fly  1429 PSLPEATEKNQNPEGASNQTVSADNLAWKQTVETIAENVFASAKTQIISNQLAMNTSSSREARAK 1493
            .:|..|..:.:..:....|.|.                 |....|:          ..::.::|.
  Fly  2036 ANLLAAANRERARQWVREQAVD-----------------FVKRYTE----------QEAKRSKAA 2073

  Fly  1494 HKESGTNQMHKDNI----SGPSPLS-----RELEHISD-LSAINNS----MPAINSSNVSDLATI 1544
             .|||..|.....:    :|.:|||     ..||.:|. |..:|.|    :.|:     .:|.||
  Fly  2074 -SESGATQSGSSGVGLSSTGNTPLSTAGSTNVLERLSSILFKLNGSYHDCLDAL-----LELKTI 2132

  Fly  1545 --SENLSLTELSKENICRVLTPSYKPAESVTASQSS---SHPDVQSSSPRENDIKNISNIEENNK 1604
              ..::|..|::...:.:.:. :|..:|:....:.:   |...|.:..|.|..::|:..:.....
  Fly  2133 LLESDISPFEVNHSGLIKAML-NYMTSETGLVERDARLRSFMHVFAGLPLEPLLQNVGQMPTIEP 2196

  Fly  1605 MNANNSVNKISKDLLANLRTSNIAGCPPVTQLSTEALEMIDKMRDGVDMIRNMSNSILSTDTFPV 1669
            :.....|.|::             ||  ||||                            :.|||
  Fly  2197 IAFGAFVAKLN-------------GC--VTQL----------------------------EQFPV 2218

  Fly  1670 PCTNVPV--GGKKTPKAQALINPDNANQKQIIVTSEEFP----TKSSKKPSVTLKPAQQPNAVLS 1728
            ...:.|.  ||:....|....     |..|:....:..|    .:..|..:|.:.|       |:
  Fly  2219 KVHDFPAGPGGRSNQSALRFF-----NTHQLKCNLQRHPQCNNLRQWKGGTVKIDP-------LA 2271

  Fly  1729 IVDIKEQPISNENVSVPSQMSISVPNLTTTSASEVPSTSEVATHTGLLETFAAIARRRTSQGTNI 1793
            :|.                                                 ||.|....:|.. 
  Fly  2272 MVQ-------------------------------------------------AIERYLVVRGYG- 2286

  Fly  1794 QDNQIMNAEANVNEHGDQNASGSFLGHSVTSLVKLALSSNFHSGLLSTAQSYPSLSSNNSENIAP 1858
                  ...|:.::..:::                 :..|..:.:||.|.....|.....:::.|
  Fly  2287 ------GIRADSDDDSEED-----------------MDDNVAAVVLSQASFRHKLQFTIGDHVLP 2328

  Fly  1859 SNPSNTSAGQQSASTINHTLTMSLTSTSSDSEQVSLEDFLESCRAPALLGDLDDEDDMDEDNDEE 1923
            .|.:...|.:|.:..:              |||                             .|.
  Fly  2329 YNMTVYQAVKQFSPLV--------------SEQ-----------------------------PET 2350

  Fly  1924 ENEDEYEEVGNTLL---QVMVSRNLLTF--MDDEAMENRLVGVTKRKSWDDEFVLKRQFSALIPA 1983
            :||.|      |||   .:.|.::.:.:  :::|.......|.....|.....|.|:|.|:    
  Fly  2351 DNESE------TLLGNASIWVQQHTIHYRPVEEEVTSGAAAGAASSSSSCSSGVQKQQSSS---- 2405

  Fly  1984 FDPRPGRTNVNQTSDLEISPLGAELPKPQQSGGPETIEQPLLGLKLRGPGIGGIPEVEIDLSNTD 2048
               ....:.||.||....|                           .|...||            
  Fly  2406 ---SSASSCVNATSSCSSS---------------------------SGVASGG------------ 2428

  Fly  2049 WTIFRAVQELLQCSQLNKLDKFRKIW-EPTYTIVYREVSPEAQESTCLESEEFPQTPDVSSKSGA 2112
                .::.:....|....:.|..::| |....:|...:.|                         
  Fly  2429 ----GSLTKKAHKSSSKFMRKKTELWHEGIAPVVISALKP------------------------- 2464

  Fly  2113 STLSPNSPMHIGFNVADNNLCSVDDVLELLTQINGLNQSEIDSDVKEH------GVSVLSEDLFI 2171
             .||.:.|..: ..|.|.:|    |.|.:|..|:.||:.      .:|      ..:::.:..||
  Fly  2465 -FLSSSLPADV-VTVQDASL----DALCMLRVIHALNRH------WDHLYGCVVRQNIIPQSDFI 2517

  Fly  2172 SKKITNKLQQQIQDPLVLASNALPNWCENLNQSCPFLFPFETRQLYFNCTSFGASRSIVCLQSQR 2236
            ..||..|..:|:|||||:.:..||.|...:..:||||||||||.|.|..|||...|:   ||...
  Fly  2518 HPKIMAKANRQLQDPLVIMTGNLPQWLPQIGMACPFLFPFETRHLLFYATSFDRDRA---LQRLL 2579

  Fly  2237 DVTVE------RQRIPIMSPRRDDHEFRIGRLKHERVKVPRNEDLLMWAMQVMKTHCNRKSVLEV 2295
            |.|.:      .:|:   :||.|..:..|.|           .::|..|..:::...:.|::||:
  Fly  2580 DTTPDLNAAESSERV---APRLDRRKRAISR-----------TEILKQAEHILQDFGHSKALLEI 2630

  Fly  2296 EFLDEEGTGLGPTLEFYALVAAEIQRSDLCMWLCDDDLGEDT----------------------- 2337
            ::.:|.||||||||||||||:||:||:||.:|...|...:::                       
  Fly  2631 QYENEVGTGLGPTLEFYALVSAELQRTDLGLWNGSDSYKQNSVTIVDVVKANSAVLHIEDALEAT 2695

  Fly  2338 ----------------------------------------------------ENSTQSAEGNSKP 2350
                                                                |:|:.||..|...
  Fly  2696 TTDQNTPAVAGASLVSSSTTTTTTTAQQHQHPPTRSSSRSHVLRSGAGQQPVEHSSSSAGANENA 2760

  Fly  2351 VGYYVNRR------------------------------------------------EHGIFPAPL 2367
            :...:.::                                                .||:||.||
  Fly  2761 LNMVIAQQFSDTNSANPAAIDNPSSTTTATTVVQHNTTTNNSSIITTTTTTSYVHAVHGLFPLPL 2825

  Fly  2368 PQNSEICE--NVLKYFWFFGVFVAKVLQDMRLVDIPLSTSFLQLLCHNKVLSRNLQKVISDRRNG 2430
            .::|::.:  .....|.|.|.|:||.:.|.|::|:|.|..|.:.|                    
  Fly  2826 GKSSKLPQMTKAKAKFKFLGKFMAKAVMDSRMLDLPFSLPFYRWL-------------------- 2870

  Fly  2431 DLSVVSEDSDIVETCTKLLRTDSNKSNAFGGILSLENLKEIDPTRYQFLQEMQNLLLRKQSIEFD 2495
                |||:..|                      .|.:|..:.|.....|..:|:|:.:::.|..|
  Fly  2871 ----VSEEHSI----------------------GLADLMRVAPEVQNTLVRLQDLVRQREYILSD 2909

  Fly  2496 DTISAEKKHELINELKLQTQNGLEVSLEDLALTFTYLPSSSIYGYTQAELLPNGSSVNVTIDNLE 2560
            ..|.|.:|.|.|.:|.|   :|..::  ||.|.|. ||     |:...||...|....||:.||.
  Fly  2910 PNIDAMEKTEKIEQLDL---DGCPIA--DLGLDFV-LP-----GHANIELCRGGRDTPVTVHNLH 2963

  Fly  2561 AYCELLMNFILQDGIAQQMKAFSDGFNEVFPLKKLAAFTPSEARMMICG----EQFPHWSREDII 2621
            .|..|:..:.|.:|:.:|.:|..:||:.|||:::|..|.|.|...:.||    :|...|..:.:.
  Fly  2964 QYISLVTYWFLIEGVQKQFEALREGFDSVFPIQRLRMFYPEELECVFCGSGSEQQHSRWEIKMLQ 3028

  Fly  2622 SYTEPKLGYNKDSPGFQRFVNVLLSMSGDERKAFLQFTTGCSSLPPGGLANLHPRLTVVRKV--- 2683
            .......|:::||...|....:|.|.:.||::|||||.||...||.||...|.|.||:|||.   
  Fly  3029 ESCRTDHGFHQDSQAIQYLYEILASYNRDEQRAFLQFVTGSPRLPTGGFKALTPPLTIVRKTLDE 3093

  Fly  2684 DAGVGSY-PSVNTCVHYLKLPDYPTEEIMKERLLTATKE--KGFHLN 2727
            :.....| |||.|||:|||||||.:.|:|:::|..|..|  ..|||:
  Fly  3094 NQNPNDYLPSVMTCVNYLKLPDYSSREVMRQKLKVAANEGSMSFHLS 3140

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ufd4NP_609369.1 ANK repeat 393..420 CDD:293786 6/26 (23%)
ANK 396..509 CDD:238125 27/124 (22%)
ANK repeat 422..453 CDD:293786 4/30 (13%)
ANK repeat 455..484 CDD:293786 9/39 (23%)
F5_F8_type_C 1173..1298 CDD:329041 22/124 (18%)
MIB_HERC2 1333..1389 CDD:310955 7/55 (13%)
DamX 1576..>1725 CDD:330571 26/157 (17%)
HECTc 2265..2725 CDD:238033 151/594 (25%)
ctripNP_001189170.1 Extensin_2 <688..731 CDD:252669
WWE 1409..1481 CDD:128922 19/95 (20%)
FAM199X <1985..2074 CDD:292442 23/155 (15%)
HECTc <2818..3138 CDD:294058 118/376 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5021
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D10145at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR45670
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3704
SonicParanoid 00.000 Not matched by this tool.
54.950

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