DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ufd4 and Su(dx)

DIOPT Version :9

Sequence 1:NP_609369.1 Gene:Ufd4 / 34378 FlyBaseID:FBgn0032208 Length:2727 Species:Drosophila melanogaster
Sequence 2:NP_001259898.1 Gene:Su(dx) / 33379 FlyBaseID:FBgn0003557 Length:949 Species:Drosophila melanogaster


Alignment Length:1207 Identity:232/1207 - (19%)
Similarity:382/1207 - (31%) Gaps:440/1207 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly  1668 PVPCTNVPVGGKKTPKAQALINPDNANQ--KQIIVTSEEFPTKSSKKPSVTLKPAQQPNAVLSIV 1730
            |.|.::...|..           .:|||  .|:.||.||    :|.:.:..|||  .|...| ::
  Fly    30 PTPTSSSGAGAS-----------GSANQGYHQLSVTIEE----ASLRNNGFLKP--NPYVEL-LI 76

  Fly  1731 DIKEQ-----------PISNENVSVPSQMSISVPNLTTTSASEVPSTSEVATHTGLLETFAAIAR 1784
            |.|.:           |..||..:|     :..||.|.        ..:|..|:..        |
  Fly    77 DSKSKRKTDLVKNSYLPKWNEEFTV-----LITPNSTL--------HFKVLDHSSF--------R 120

  Fly  1785 RRTSQGTNIQDNQIMNAEANVNEHGDQNASGSFLGHSVTSLVKLALSSN----------FHSGL- 1838
            :....|     .:|:|. |::.:|  .|....||..:: .|...:.|.|          ..:|| 
  Fly   121 KDAMLG-----ERIINL-AHILQH--YNGRCEFLELTI-DLFVTSKSDNRQTKSGELVAILNGLK 176

  Fly  1839 --LSTAQSYPSLSSNNS----ENIAPSNPSNTSAGQQSASTINHTLTMSLTSTSSDSEQVSLE-- 1895
              :|..|..|.....|.    :.:.||..|:.:||:...........|.|.|:|.:|......  
  Fly   177 LDMSKLQIQPVAGQQNGNPPVQAVNPSVVSDAAAGRSCMIYGGVRARMRLRSSSGNSNGGETRSP 241

  Fly  1896 ------DFLESCRAPALLGDLDDEDDMDEDNDEEENEDEYEEVGNTLLQVMVSRNLLTFMDDEAM 1954
                  |...|.:||.:         .::...:.:|:.:                          
  Fly   242 LPNGGGDHRRSTQAPPV---------WEQQQQQSQNQQQ-------------------------- 271

  Fly  1955 ENRLVGVTKRKSWDDEFVLKRQFSALIPAFDPRPGR----------TNVNQTSDLEISPLGAELP 2009
            ..|:|..:               .|.:|...|.|.:          |.|.........|....||
  Fly   272 PLRMVNGS---------------GAAVPQTAPYPQQPPAPALARPLTQVYGALPENTQPAAVYLP 321

  Fly  2010 K-------PQQSGGPETIEQPLLGL---------------------------------------- 2027
            .       |....|| .||||.:||                                        
  Fly   322 AGGGAAVGPPGVAGP-PIEQPGVGLPVSQSTDPQLQTQPADDEPLPAGWEIRLDQYGRRYYVDHN 385

  Fly  2028 ----------------KLRGPGIGGIPEVEIDLSNTDWTIFRAVQELLQCSQLNKLDKFRKIWEP 2076
                            ::|..|.|.:..|:.:...|.|.  |...|.|...|..:..:...:.:.
  Fly   386 TRSTYWEKPTPLPPGWEIRKDGRGRVYYVDHNTRKTTWQ--RPNSERLMHFQHWQGQRAHVVSQG 448

  Fly  2077 TYTIVYREVSPEAQESTCLESEEFPQTPDVSSKSGASTLSPNSPMHIGFN---VADNNLCSVDDV 2138
            ....:|   |.:.|:.|.:.::   .|.|.....|        |:..|:.   .:||.:..|   
  Fly   449 NQRYLY---SQQQQQPTAVTAQ---VTQDDEDALG--------PLPDGWEKKIQSDNRVYFV--- 496

  Fly  2139 LELLTQINGLNQSEIDSDVKEHG--VSVLSED----------------LFISKKITNKLQQQIQD 2185
                   |..|::....|.:..|  ||:::|.                .|:..   |..:...:|
  Fly   497 -------NHKNRTTQWEDPRTQGQEVSLINEGPLPPGWEIRYTAAGERFFVDH---NTRRTTFED 551

  Fly  2186 PLVLASN------ALPNWCENLNQSCPFLFPFETRQLYFNCTSFGASRSIVCLQSQRDVTVERQR 2244
            |...|..      .:|...|.       .|.::..|..:.|.|       ..|.|...:||.||.
  Fly   552 PRPGAPKGAKGVYGVPRAYER-------SFRWKLSQFRYLCQS-------NALPSHIKITVTRQT 602

  Fly  2245 IPIMSPRRDDHEFRIGRLKHERVKVPRNEDLLMWAMQVMKTHCNRKSVLEVEFLDEEGTGL-GPT 2308
            :     ..|.:        |:.:::|..|             ..|:  |.:.|..|||... |.:
  Fly   603 L-----FEDSY--------HQIMRLPAYE-------------LRRR--LYIIFRGEEGLDYGGVS 639

  Fly  2309 LEFYALVAAEIQRSDLCMWLCDDDLGEDTENSTQSAEGNSKPVGYYVNRREHG--IFPAPLPQNS 2371
            .|::.|::.|:.....|::                         .|.|:..:.  |.||     |
  Fly   640 REWFFLLSHEVLNPMYCLF-------------------------EYANKNNYSLQINPA-----S 674

  Fly  2372 EICENVLKYFWFFGVFVAKVLQDMRLVDIPLSTSFLQLLCHNKVLSRNLQKVISDRRNGDLSVVS 2436
            .:..:.|:||.|.|.|:|..|...|.:....:..|.:.:.:.|                      
  Fly   675 YVNPDHLQYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKK---------------------- 717

  Fly  2437 EDSDIVETCTKLLRTDSNKSNAFGGILSLENLKEIDPTRYQFLQEMQNLLLRKQSIEFDDTISAE 2501
                                      |::::::.|||..|..|..:::..:.:..:|...::..|
  Fly   718 --------------------------LTIKDIETIDPEFYNSLIWVKDNNIDECGLELWFSVDFE 756

  Fly  2502 KKHELINELKLQTQNGLEVSLEDLALTFTYLPSSSIYGYTQAELLPNGSSVNVTIDNLEAYCELL 2566
            ...::|:.                                  ||..||....||.:|.|.|..|:
  Fly   757 VLGQIIHH----------------------------------ELKENGEKERVTEENKEEYITLM 787

  Fly  2567 MNFILQDGIAQQMKAFSDGFNEVFPLKKLAAFTPSEARMMICGEQ---FPHWSREDIISYTEPKL 2628
            ..:.:..||.||.|.|.:|||||.||:.|..|...|..:::||.|   ...|.|..|..:     
  Fly   788 TEWRMTRGIEQQTKTFLEGFNEVVPLEWLKYFDERELELILCGMQDVDVEDWQRNTIYRH----- 847

  Fly  2629 GYNKDSPGFQRFVNVLLSMSGDERKAFLQFTTGCSSLPPGGLANL----HPRLTVVRKVDAGVGS 2689
             ||::|.....|...:.....::|...|||.||...:|.||.|.|    .|:...:.||  |..:
  Fly   848 -YNRNSKQVVWFWQFVRETDNEKRARLLQFVTGTCRVPVGGFAELMGSNGPQRFCIEKV--GKET 909

  Fly  2690 Y-PSVNTCVHYLKLPDYPTEEIMKERLLTATKE-KGF 2724
            : |..:||.:.|.||.|.:.:.:.|:|..|.:| :||
  Fly   910 WLPRSHTCFNRLDLPPYKSYDQLVEKLTFAIEETEGF 946

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ufd4NP_609369.1 ANK repeat 393..420 CDD:293786
ANK 396..509 CDD:238125
ANK repeat 422..453 CDD:293786
ANK repeat 455..484 CDD:293786
F5_F8_type_C 1173..1298 CDD:329041
MIB_HERC2 1333..1389 CDD:310955
DamX 1576..>1725 CDD:330571 16/58 (28%)
HECTc 2265..2725 CDD:238033 103/472 (22%)
Su(dx)NP_001259898.1 C2_E3_ubiquitin_ligase 48..173 CDD:175988 34/161 (21%)
WW 364..396 CDD:197736 0/31 (0%)
WW 397..426 CDD:278809 6/30 (20%)
WW 478..509 CDD:197736 8/40 (20%)
WW 522..554 CDD:197736 4/34 (12%)
HECTc 594..946 CDD:238033 107/499 (21%)
HECTc 620..946 CDD:214523 99/447 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45447004
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5021
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.830

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