DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ufd4 and Smurf2

DIOPT Version :9

Sequence 1:NP_609369.1 Gene:Ufd4 / 34378 FlyBaseID:FBgn0032208 Length:2727 Species:Drosophila melanogaster
Sequence 2:NP_001100531.1 Gene:Smurf2 / 303614 RGDID:1310067 Length:748 Species:Rattus norvegicus


Alignment Length:833 Identity:177/833 - (21%)
Similarity:288/833 - (34%) Gaps:242/833 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly  1967 WDDEFVLKRQFSALIPAFDPRPGRTNVNQTSD-----LEISPLGAELPKPQQSGGPETIE-QPLL 2025
            |:.:.:.|:|.:..:...  |.....:|:..|     |::..||     |..:   :|:. |.::
  Rat    80 WNHKKIHKKQGAGFLGCV--RLLSNAINRLKDTGYQRLDLCKLG-----PNDN---DTVRGQIVV 134

  Fly  2026 GLKLRGP-GIGGIPEVEIDLSN-------TDWTIFRAVQELLQCSQLNKLDKFRKIWE-PTYTIV 2081
            .|:.|.. |.||  :| :|.|.       ..|...|.....:|  .||.:.:..: || ||... 
  Rat   135 SLQSRDRIGTGG--QV-VDCSRLFDNDLPDGWEERRTASGRIQ--YLNHITRTTQ-WERPTRPA- 192

  Fly  2082 YREVSPEAQESTCLESEEFPQTPDVSSKSGASTLSP-------NSPMHIGFNVADNNLCSVDDVL 2139
             .|.|...:..:|...|..|.|....:..|.|: .|       .|..|..: ::..:|.:..|:.
  Rat   193 -SEYSSPGRPLSCFVDENTPITGTNGATCGQSS-DPRLAERRVRSQRHRNY-MSRTHLHTPPDLP 254

  Fly  2140 ELLTQINGLNQSEIDSDVKEHGVSVLSEDLFISKKITNKLQQQIQDPLVLASNALPNWCENLNQS 2204
            |...| ....|.::.....:.|||..                  .||.|      |....|:|  
  Rat   255 EGYEQ-RTTQQGQVYFLHTQTGVSTW------------------HDPRV------PRDLSNIN-- 292

  Fly  2205 CPFLFPF---------ETRQLYF-----NCTSF---GASRSIVCLQSQRDVTVERQRIPIMSPRR 2252
            |..|.|.         .|.::||     ..|.|   ..|.::..:.::::...::|:..::|...
  Rat   293 CEELGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRLSANLHLVLNRQNQLKDQQQQQVVSLCP 357

  Fly  2253 DDHE-FRIGRLKH---ERVKVPRNEDLLMWAMQVMKTHC----NRKSVLE--------------- 2294
            ||.| ..:.|.|.   :::|:.|.|   :...|....||    :|:.:.|               
  Rat   358 DDTECLTVPRYKRDLVQKLKILRQE---LSQQQPQAGHCRIEVSREEIFEESYRQVMKMRPKDLW 419

  Fly  2295 ----VEFLDEEGTGLGPTLEFYALVAAEIQRSDLCMWLCDDDLGEDTENSTQSAEGNSKPVGYYV 2355
                ::|..|||..       |..||.|        ||           ...|.|..:...|.:.
  Rat   420 KRLMIKFRGEEGLD-------YGGVARE--------WL-----------YLLSHEMLNPYYGLFQ 458

  Fly  2356 NRREHGIFPAPLPQNSEICENVLKYFWFFGVFVAKVLQDMRLVDIPLSTSFLQLLCHNKVLSRNL 2420
            ..|: .|:...:..:|.:....|.||.|.|..:...:.....:|...:..|.:.|          
  Rat   459 YSRD-DIYTLQINPDSAVNPEHLSYFHFVGRIMGMAVFHGHYIDGGFTLPFYKQL---------- 512

  Fly  2421 QKVISDRRNGDLSVVSEDSDIVETCTKLLRTDSNKSNAFGGILSLENLKEIDPTRYQFLQEMQNL 2485
                                                  .|..::|::::.:||            
  Rat   513 --------------------------------------LGKSITLDDMELVDP------------ 527

  Fly  2486 LLRKQSIEFDDTISAEKKHELINELKLQTQNGLEVSLEDLALTFTYLPSSSIYG-YTQAELLPNG 2549
                               :|.|.|....:|.:...|:     .|:....:.|| ..|.||.|||
  Rat   528 -------------------DLHNSLVWILENDITGVLD-----HTFCVEHNAYGEIIQHELKPNG 568

  Fly  2550 SSVNVTIDNLEAYCELLMNFILQDGIAQQMKAFSDGFNEVFPLKKLAAFTPSEARMMICG---EQ 2611
            .|:.||.:|.:.|..|.:|:....||..|..|...|||||.|...|..|...|..::|||   ..
  Rat   569 KSIPVTEENKKEYVRLYVNWRFLRGIEAQFLALQKGFNEVIPQHLLKTFDEKELELIICGLGKID 633

  Fly  2612 FPHWSREDIISYTEPKLGYNKDSPGFQRFVNVLLSMSGDERKAFLQFTTGCSSLPPGGLANLH-- 2674
            ...|.....:.:..|      ||...:.|...:.....:.|...|||.||.|.:|..|...|.  
  Rat   634 VSDWKANTRLKHCTP------DSNVVKWFWKAVELFDEERRARLLQFVTGSSRVPLQGFKALQGA 692

  Fly  2675 --PRLTVVRKVDAGVGSYPSVNTCVHYLKLPDYPTEEIMKERLLTATKEK-GF 2724
              |||..:.::||...:.|..:||.:.:.:|.|.:.|.:.|:||||.:|. ||
  Rat   693 AGPRLFTIHQIDACTNNLPKAHTCFNRIDIPPYESYEKLYEKLLTAIEETCGF 745

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ufd4NP_609369.1 ANK repeat 393..420 CDD:293786
ANK 396..509 CDD:238125
ANK repeat 422..453 CDD:293786
ANK repeat 455..484 CDD:293786
F5_F8_type_C 1173..1298 CDD:329041
MIB_HERC2 1333..1389 CDD:310955
DamX 1576..>1725 CDD:330571
HECTc 2265..2725 CDD:238033 107/492 (22%)
Smurf2NP_001100531.1 C2_Smurf-like 13..137 CDD:176028 12/66 (18%)
PRP40 155..>236 CDD:227435 18/86 (21%)
WW 159..188 CDD:395320 7/31 (23%)
WW 252..283 CDD:197736 8/49 (16%)
WW 298..330 CDD:197736 6/31 (19%)
HECTc 393..745 CDD:238033 100/468 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

Return to query results.
Submit another query.