DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Utx and Kdm5c

DIOPT Version :9

Sequence 1:NP_609368.3 Gene:Utx / 34377 FlyBaseID:FBgn0260749 Length:1136 Species:Drosophila melanogaster
Sequence 2:XP_006528832.1 Gene:Kdm5c / 20591 MGIID:99781 Length:1554 Species:Mus musculus


Alignment Length:830 Identity:161/830 - (19%)
Similarity:266/830 - (32%) Gaps:258/830 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   452 SKRRQLCSIEEA--WNLPISLE------------MNSRQQQTAQMLP--RQVTKQSPVQGPPPPY 500
            :::..:|.|...  |..|.::|            :|..:.||...|.  .|:.|...:||     
Mouse    38 AEKSGICKIRPPADWQPPFAVEVDNFRFTPRIQRLNELEAQTRVKLNYLDQIAKFWEIQG----- 97

  Fly   501 PHSQLSQSPIP------------SKRIKEDGTSQ--------QEVTQNNSQTSAQNLINISESLN 545
                 |...||            ||.:.|:|..:        ..|.|..:....:|:.::..|..
Mouse    98 -----SSLKIPNVERRILDLYSLSKIVVEEGGYETICKDRRWARVAQRLNYPPGKNIGSLLRSHY 157

  Fly   546 QRNF--NAMPESNKSSEQSVLDTFDDISNDIYKQNESIKLERLSQDALSNNEDSRHDFIGGDNAD 608
            :|..  ..|.:|..:..|.....||:...|...:..||.|.:..|.:..|:...|...:..|...
Mouse   158 ERIVYPYEMYQSGANLVQCNTRPFDNEEKDKEYKPHSIPLRQSVQPSKFNSYGRRAKRLQPDPEP 222

  Fly   609 ISTTFKIQMDSKQL--------MVAVKLLPIDEPPVHCTILQVNAPPPSPPDCPPQKLTRDQL-- 663
            .....:...:.|:|        |:.:.|:..|:        .:.......|:|||..:.:::|  
Mouse   223 TEEDIEKNPELKKLQIYGAGPKMMGLGLMAKDK--------TLRKKDKEGPECPPTVVVKEELGG 279

  Fly   664 ----LPPTPSVHLENKKH-AFSPQLQEFCLKHPIAVVRGLAGVLKLD--------LGLFSTKTLV 715
                ...:|...||.|:. :.||   |.|.|..:.:.|..:....::        .|....|.|:
Mouse   280 DVKMESTSPKTFLEGKEELSHSP---EPCTKMTMRLRRNHSNAQFIESYVCRMCSRGDEDDKLLL 341

  Fly   716 EANPDHSVEVRTQVHQSPDENWDTSQGKRVWACISHRSHTTIAK-------------YAQYQASS 767
            ....|.:..:...:...|:      ..|.||.|    ....:|:             ..:|...|
Mouse   342 CDGCDDNYHIFCLLPPLPE------IPKGVWRC----PKCVMAECKRPPEAFGFEQATREYTLQS 396

  Fly   768 F---QDSLKL--------ILPQDESDKGFPGSQAMSDSDSKDSVSNSNIVLKRKKHKINSKMLRF 821
            |   .||.|.        ::|.:..:|.|   ..:.:|..:|       |.......|:||  .|
Mouse   397 FGEMADSFKADYFNMPVHMVPTELVEKEF---WRLVNSIEED-------VTVEYGADIHSK--EF 449

  Fly   822 GTNVDLSDEKK-WKPQLTE-------LQKLPAFARVISAANMLSHVGHVILGMNTVQLYMKVPGS 878
            |:...:||.|: ..|:..|       |..:|...:     ::|.|:...|.||....||:.:..|
Mouse   450 GSGFPVSDSKRHLTPEEEEYATSGWNLNVMPVLEQ-----SVLCHINADISGMKVPWLYVGMVFS 509

  Fly   879 RTPGHQENNNFCSININIGPGDCEWFAVP-------------------DAYWGGVHNLCEKNNIS 924
            ....|.|::...|||.........|:.||                   |:....:|.|....|.:
Mouse   510 AFCWHIEDHWSYSINYLHWGEPKTWYGVPSLAAEHLEEVMKKLTPELFDSQPDLLHQLVTLMNPN 574

  Fly   925 YL--HGSWWPVLEDLYKENIPVYRFIQKPGDLVWVNAGCVH--------WVQSIGWCNNIAWNVG 979
            .|  ||             :||.|..|..|:.|.......|        :.:::.:| ...|   
Mouse   575 TLMSHG-------------VPVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFC-TADW--- 622

  Fly   980 PLTA-RQYSLAIERYEWNKVQAFKSIVPMVHLSWNLARNIKVSDTKLFELIKMC---LLQTLKNV 1040
             |.| ||   .||.|.                  .|.|....|..:|...:..|   |...|...
Mouse   623 -LPAGRQ---CIEHYR------------------RLRRYCVFSHEELICKMAACPEKLDLNLAAA 665

  Fly  1041 LHIQEYV---KSKGVEIRFNGRGKNEASHYCGQCEVEVFNVLFIKEQEKRHVVHCLSC------- 1095
            :|.:.::   :.:.:......:|..||       |.|.|.:|...|::      |:.|       
Mouse   666 VHKEMFIMVQEERRLRKALLEKGITEA-------EREAFELLPDDERQ------CIKCKTTCFLS 717

  Fly  1096 ALKLSPSLQGIVCLE-----------------EYRLSELQRVYDSFTLHR 1128
            ||.......|:|||.                 .|.|.||..:     ||:
Mouse   718 ALACYDCPDGLVCLSHINDLCKCSSSRQYLRYRYTLDELPAM-----LHK 762

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
UtxNP_609368.3 TPR repeat 147..181 CDD:276809
TPR_11 156..216 CDD:290150
TPR repeat 186..216 CDD:276809
TPR repeat 228..255 CDD:276809
TPR_11 264..337 CDD:290150
TPR repeat 265..300 CDD:276809
TPR repeat 307..334 CDD:276809
TPR_11 339..402 CDD:290150
TPR repeat 339..369 CDD:276809
TPR_1 340..373 CDD:278916
TPR repeat 374..402 CDD:276809
JmjC 870..978 CDD:202224 27/136 (20%)
Kdm5cXP_006528832.1 JmjN 13..54 CDD:128818 3/15 (20%)
ARID_KDM5C_5D 79..170 CDD:350639 19/100 (19%)
PHD1_KDM5C_5D 326..371 CDD:277077 9/54 (17%)
JmjC 501..617 CDD:334913 25/128 (20%)
zf-C5HC2 707..759 CDD:367254 12/51 (24%)
PLU-1 772..1098 CDD:369871
PHD_SF 1187..1247 CDD:389947
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0055
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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