DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rsf1 and RNA15

DIOPT Version :10

Sequence 1:NP_477001.2 Gene:Rsf1 / 34370 FlyBaseID:FBgn0011305 Length:200 Species:Drosophila melanogaster
Sequence 2:NP_011471.1 Gene:RNA15 / 852838 SGDID:S000003012 Length:296 Species:Saccharomyces cerevisiae


Alignment Length:129 Identity:26/129 - (20%)
Similarity:56/129 - (43%) Gaps:16/129 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 VYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFNP-----PGFAFVEFEHRDDAEKACDILNGSEL 71
            ||:|::.....::.:....:..|.:.::.:.|:|     .|:||:||...:.:..|...|||.:|
Yeast    20 VYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQL 84

  Fly    72 ------LGSQLRVEISKGRPRQGRRGGPMDRGGRRGDFGRHSITSGGSGGGGFRQRGSSGSSSR 129
                  .|.....:||....:|.::...::     |:...:...:..|.|..|:..|::...|:
Yeast    85 GSRFLKCGYSSNSDISGVSQQQQQQYNNIN-----GNNNNNGNNNNNSNGPDFQNSGNANFLSQ 143

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rsf1NP_477001.2 RRM_SRSF3_like 11..82 CDD:409808 18/80 (23%)
RNA15NP_011471.1 RRM_CSTF2_RNA15_like 18..94 CDD:409832 17/73 (23%)
CSTF_C 255..291 CDD:464130
Blue background indicates that the domain is not in the aligned region.

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