DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rsf1 and NPL3

DIOPT Version :10

Sequence 1:NP_477001.2 Gene:Rsf1 / 34370 FlyBaseID:FBgn0011305 Length:200 Species:Drosophila melanogaster
Sequence 2:NP_010720.3 Gene:NPL3 / 852042 SGDID:S000002840 Length:414 Species:Saccharomyces cerevisiae


Alignment Length:299 Identity:77/299 - (25%)
Similarity:95/299 - (31%) Gaps:115/299 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 GDQRGTRVYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFNPPGFAFVEFEHRDDAEKA------- 62
            |:...||::|......|::.:|...|..:|.:..|.|.   .||||||||..:.|.||       
Yeast   120 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGK 181

  Fly    63 -----------------------------C----------------------------------- 63
                                         |                                   
Yeast   182 SFANQPLEVVYSKLPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFP 246

  Fly    64 ---------DILNGSELLGSQLRVEISKGRP--RQGRRGGPMDRGGRRGDFG---RHSITSGGSG 114
                     :.||..|..||.:.||.....|  |:..|||...|||.||.|.   |...:.||.|
Yeast   247 SEEILVEALERLNNIEFRGSVITVERDDNPPPIRRSNRGGFRGRGGFRGGFRGGFRGGFSRGGFG 311

  Fly   115 G--GGF-RQRGSSGSSSRHTERGYSSGRSGAS--SYNGREGG----GSGFNR------------- 157
            |  ||| ..||..|..||....|||.|..|.|  .|:...||    ..|::|             
Yeast   312 GPRGGFGGPRGGYGGYSRGGYGGYSRGGYGGSRGGYDSPRGGYDSPRGGYSRGGYGGPRNDYGPP 376

  Fly   158 REVYGGGRDSSRYSSGSSASYG--RTGGQSAGRFRSRSP 194
            |..|||.|..   ..|....||  |...::....|.|||
Yeast   377 RGSYGGSRGG---YDGPRGDYGPPRDAYRTRDAPRERSP 412

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rsf1NP_477001.2 RRM_SRSF3_like 11..82 CDD:409808 27/150 (18%)
NPL3NP_010720.3 PHA03247 <11..87 CDD:223021
RBD_RRM1_NPL3 126..192 CDD:409777 19/68 (28%)
RRM2_SRSF1_4_like 200..271 CDD:409776 6/70 (9%)
Blue background indicates that the domain is not in the aligned region.

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