DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rsf1 and CSTF64

DIOPT Version :10

Sequence 1:NP_477001.2 Gene:Rsf1 / 34370 FlyBaseID:FBgn0011305 Length:200 Species:Drosophila melanogaster
Sequence 2:NP_177325.2 Gene:CSTF64 / 843510 AraportID:AT1G71800 Length:461 Species:Arabidopsis thaliana


Alignment Length:170 Identity:46/170 - (27%)
Similarity:69/170 - (40%) Gaps:27/170 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSSMGDQRGTRVYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFN-----PPGFAFVEFEHRDDAE 60
            |:|...||.. |:|||:.....::.|.....:.|.:.|..:..:     |.|:.|.|::..:.|.
plant     1 MASSSSQRRC-VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETAL 64

  Fly    61 KACDILNGSELLGSQLRVEIS---KG--RPRQGRRGGPMDRGGRRGDFGRHSITSGGSGGGGFRQ 120
            .|...|...|:.|.||||:.:   ||  :.|...:|||          |..|.|:.....   :|
plant    65 SARRNLQSYEINGRQLRVDFAENDKGTDKTRDQSQGGP----------GLPSTTTVTESQ---KQ 116

  Fly   121 RGSSGSSSRHTERGYSSGRSGASSYNGREGG---GSGFNR 157
            .|....|:.|...|.....:.||...|..||   ||.|.:
plant   117 IGGPVDSNMHQPVGLHLATTAASVIAGALGGPQVGSQFTQ 156

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rsf1NP_477001.2 RRM_SRSF3_like 11..82 CDD:409808 20/78 (26%)
CSTF64NP_177325.2 RRM_CSTF2_RNA15_like 9..85 CDD:409832 20/76 (26%)
SF-CC1 <11..212 CDD:273721 42/159 (26%)
CSTF_C 419..454 CDD:464130
Blue background indicates that the domain is not in the aligned region.

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