DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rsf1 and Srsf1

DIOPT Version :10

Sequence 1:NP_477001.2 Gene:Rsf1 / 34370 FlyBaseID:FBgn0011305 Length:200 Species:Drosophila melanogaster
Sequence 2:NP_001103022.1 Gene:Srsf1 / 689890 RGDID:1587490 Length:248 Species:Rattus norvegicus


Alignment Length:238 Identity:82/238 - (34%)
Similarity:105/238 - (44%) Gaps:66/238 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSSMGDQRG------TRVYVGNLTDKVKKDDLEGEFTKYGKLNSVWI---AFNPPGFAFVEFEHR 56
            ||..|..||      .|:|||||...::..|:|..|.|||.:..:.:   ...|| |||||||..
  Rat     1 MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPP-FAFVEFEDP 64

  Fly    57 DDAEKACDILNGSELLGSQLRVEISKGRPRQGRRGGPMDRGGRRGDFGRHSITSGGSGGGGFRQR 121
            .|||.|....:|.:..|.:||||.    ||.|       ||..||         ||.||||...|
  Rat    65 RDAEDAVYGRDGYDYDGYRLRVEF----PRSG-------RGTGRG---------GGGGGGGGAPR 109

  Fly   122 GSSGSSSRHTE-RGYSSGRSGASSYNG-----REGG----------GSG---FNRRE--VYGGGR 165
            |..|..||.:| |...||...:.|:..     ||.|          |:|   |.|:|  .|...:
  Rat   110 GRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRK 174

  Fly   166 -DSSRYSS--GSSA------------SYGRTGGQSAGRFRSRS 193
             |::::.|  |.:|            ||||:..:|..|.||||
  Rat   175 LDNTKFRSHEGETAYIRVKVDGPRSPSYGRSRSRSRSRSRSRS 217

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rsf1NP_477001.2 RRM_SRSF3_like 11..82 CDD:409808 31/73 (42%)
Srsf1NP_001103022.1 RRM1_SRSF1 12..90 CDD:410010 31/82 (38%)
RRM2_SRSF1 113..196 CDD:410160 21/82 (26%)

Return to query results.
Submit another query.