DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rsf1 and Srsf4

DIOPT Version :10

Sequence 1:NP_477001.2 Gene:Rsf1 / 34370 FlyBaseID:FBgn0011305 Length:200 Species:Drosophila melanogaster
Sequence 2:NP_001356237.1 Gene:Srsf4 / 57317 MGIID:1890577 Length:496 Species:Mus musculus


Alignment Length:200 Identity:57/200 - (28%)
Similarity:76/200 - (38%) Gaps:28/200 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 RVYVGNLTDKVKKDDLE------GEFT----KYGKLNSVWIAFNPPGFAFVEFEHRDDAEKACDI 65
            |:.|.||:.:....||:      ||.|    ..|:.|.          ..:||....|.::|.:.
Mouse   110 RLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNE----------GVIEFVSYSDMKRALEK 164

  Fly    66 LNGSELLGSQLR-VEISKG--RPRQGRRGGPMDRGGRRGDFGRHSITSGGSGGGGF---RQRGSS 124
            |:|:|:.|.::| ||...|  |.|...|.....|...|....|.|.:..||.....   |.|..|
Mouse   165 LDGTEVNGRKIRLVEDKPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRS 229

  Fly   125 GSSSRHTERGYSSGRSGASSYNGREGGGSGFNRREVYGGGRDSSRYSSGSSASYGRTGGQSAGRF 189
            ||.||...|..|..||.:.....|  ..|..|:........|.||..|...|........|||:.
Mouse   230 GSHSRSKSRSRSQSRSRSKKEKSR--SPSKDNKSRSRSRSPDKSRSKSKDHAEDKLQNNDSAGKA 292

  Fly   190 RSRSP 194
            :|.||
Mouse   293 KSHSP 297

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rsf1NP_477001.2 RRM_SRSF3_like 11..82 CDD:409808 22/81 (27%)
Srsf4NP_001356237.1 RRM_SF <42..92 CDD:473069
RRM2_SRSF4_like 109..180 CDD:410012 21/79 (27%)
U2AF_lg 250..>361 CDD:273727 13/49 (27%)
Blue background indicates that the domain is not in the aligned region.

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