DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rsf1 and cirbp

DIOPT Version :10

Sequence 1:NP_477001.2 Gene:Rsf1 / 34370 FlyBaseID:FBgn0011305 Length:200 Species:Drosophila melanogaster
Sequence 2:NP_001017228.1 Gene:cirbp / 549982 XenbaseID:XB-GENE-492781 Length:166 Species:Xenopus tropicalis


Alignment Length:173 Identity:41/173 - (23%)
Similarity:69/173 - (39%) Gaps:44/173 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   143 LTVRTMTLESFGLEKYMEEHLNAANKHFQLLKYKGISDDNTENKIGFYPHID----RHFLTILCQ 203
            |..|....:::|.|:.::   ....|.|.||   |.:....|.|     .:|    ||  ..:.|
 Frog    70 LAERMAIRQTWGKERMVK---GKQLKTFFLL---GTTSSAAETK-----EVDQESQRH--GDIIQ 121

  Fly   204 NDAVD---GLEIKTKDGEEWIKVKPSQASSFIVMAGASLHVLLNGGVFPPLHRVVITGKKDRYVA 265
            .|.:|   .|.:||..|.||:.....|| :|::...:.:.:.::       :...:..||:| ..
 Frog   122 KDFLDVYYNLTLKTMMGIEWVHRFCPQA-AFVMKTDSDMFINVD-------YLTELLLKKNR-TT 177

  Fly   266 ALFTIPKEGVI-INAPEEMVDDEHPRLYKPFDFWGFLKFSNLP 307
            ..||    |.: :|        |.| :.:||..| |:..|..|
 Frog   178 RFFT----GFLKLN--------EFP-IRQPFSKW-FVSKSEYP 206

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rsf1NP_477001.2 RRM_SRSF3_like 11..82 CDD:409808
cirbpNP_001017228.1 RRM_CIRBP_RBM3 6..85 CDD:409883 4/14 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 68..166 26/116 (22%)
Blue background indicates that the domain is not in the aligned region.

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