DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rsf1 and srsf7

DIOPT Version :9

Sequence 1:NP_001260318.1 Gene:Rsf1 / 34370 FlyBaseID:FBgn0011305 Length:200 Species:Drosophila melanogaster
Sequence 2:NP_001007487.1 Gene:srsf7 / 493215 XenbaseID:XB-GENE-920026 Length:234 Species:Xenopus tropicalis


Alignment Length:209 Identity:80/209 - (38%)
Similarity:96/209 - (45%) Gaps:28/209 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSSMGDQRG-TRVYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFNPPGFAFVEFEHRDDAEKACD 64
            ||..|...| .:||||||.....|.:||..|:.||.|.:||||.|||||||||||...|||.|..
 Frog     1 MSRYGRYAGEAKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDTRDAEDAVR 65

  Fly    65 ILNGSELLGSQLRVEISKGRPRQGRRGGPMDRG-----------GRRG----DFGRHSITSGGSG 114
            .|:|..:.||::|||:|.|.||:.|...|..|.           |.:|    |..|:|...    
 Frog    66 GLDGKVICGSRVRVELSTGMPRRSRYDRPPARRPFDPSDRCYECGEKGHYAYDCQRYSRRR---- 126

  Fly   115 GGGFRQRGSSGSSSRHTERGYSSGRSGASSYNGREGGGSGFNRREVYGGGRDSSRYSSGSSASYG 179
                |.|..|.|.||...|.|:..||.:.....|    |...||......|.|...:..||.|..
 Frog   127 ----RSRTRSRSHSRSRGRRYTRSRSRSRGRRSR----SASPRRSRSASPRRSRNATPRSSRSGS 183

  Fly   180 RTGGQSAGRFRSRS 193
            ....:|..|.||||
 Frog   184 VKRSRSLSRSRSRS 197

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rsf1NP_001260318.1 RRM_SRSF3_like 11..82 CDD:409808 39/70 (56%)
srsf7NP_001007487.1 RRM_SF 12..88 CDD:327398 42/75 (56%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1533297at2759
OrthoFinder 1 1.000 - - FOG0000474
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23147
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
55.020

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