Protein Alignment Rsf1 and msi

DIOPT Version :10

• Sequence 1: NP_477001.2
• Gene: Rsf1 / 34370
• FlyBaseID: FBgn0011305
• Length: 200
• Species: Drosophila melanogaster
• Sequence 2: NP_733108.2
• Gene: msi / 43087
• FlyBaseID: FBgn0011666
• Length: 634
• Species: Drosophila melanogaster
• Alignment Length: 150
• Identity: 37/150 - (24%)
• Similarity: 57/150 - (38%)
• Gaps: 28/150 - (18%)

  Fly     3 SMGDQRGTRVYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFNP-----PGFAFVEFEHRDDAEKA 62
            |..|....:::||.|:.:...|.|:..|..:|.:..|.|..:|     .||.|:.|:.....||.
  Fly   196 SGSDPAPGKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKV 260

  Fly    63 CDI----LNGSELLGSQLRVEISKGRPRQGRRGGPMDRGGRRGDFGRHSITSGGSGGGGFRQRG- 122
            ..:    |:|.::   ..:....|.||||..:...:..||...|      ||.......|.|.|
  Fly   261 LKVPIHTLDGKKI---DPKHATPKNRPRQANKTKKIFVGGVSQD------TSAEEVKAYFSQFGP 316

  Fly   123 -------SSGSSSRHTERGY 135
                   ....:.||  ||:
  Fly   317 VEETVMLMDQQTKRH--RGF 334

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rsf1	NP_477001.2	RRM_SRSF3_like	11..82	CDD:409808	18/79 (23%)
msi	NP_733108.2	RRM_SF	204..278	CDD:473069	18/76 (24%)
		RRM2_MSI	292..365	CDD:240769	12/50 (24%)