DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment Rsf1 and CG5213

DIOPT Version :9

Sequence 1:	NP_001260318.1	Gene:	Rsf1 / 34370	FlyBaseID:	FBgn0011305	Length:	200	Species:	Drosophila melanogaster
Sequence 2:	NP_650473.1	Gene:	CG5213 / 41892	FlyBaseID:	FBgn0038345	Length:	251	Species:	Drosophila melanogaster

Alignment Length:	172	Identity:	44/172 - (25%)
Similarity:	58/172 - (33%)	Gaps:	54/172 - (31%)

- Green bases have known domain annotations that are detailed below.

  Fly     6 DQRGTRVYVGNLTDKVKKDDLEGEFTKYGKL---NSVWIAFN--PPGFAFVEFEHRDDAEKACDI 65
            :...:.:|||||...:.:..:...|..||.:   |.:...||  ..|.||::||...|||.|
  Fly   123 ESTSSSLYVGNLPTYMDEKKVRELFATYGNIVDVNLLRHKFNNRSRGVAFLQFELVRDAEVA--- 184

  Fly    66 LNGSELLGSQLRVEISKGRPRQGRRGGPMDR----GGRRGDFGRHSITSGGSGGGGFRQRGSSGS 126
                                :.|     |||    |..|      .:|.      .|.:|...||
  Fly   185 --------------------KYG-----MDRYMIEGASR------PLTV------KFVEREKKGS 212

  Fly   127 SSRHTERGYSSGR-SGASSYNGREGGGSGFNRREVYGGGRDS 167
            ||..:...|...| |....|..||    ..|...|....|||
  Fly   213 SSTSSGSQYKDKRKSSPPPYKRRE----RTNDHHVSKRSRDS 250

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Rsf1	NP_001260318.1	RRM_SRSF3_like	11..82	CDD:409808	20/75 (27%)
CG5213	NP_650473.1	RRM1_Hu_like	41..117	CDD:240821
CG5213	NP_650473.1	RRM	128..202	CDD:214636	26/107 (24%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	P	PTHR23147
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	1	1.100