DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rsf1 and tia1

DIOPT Version :10

Sequence 1:NP_477001.2 Gene:Rsf1 / 34370 FlyBaseID:FBgn0011305 Length:200 Species:Drosophila melanogaster
Sequence 2:XP_012814227.2 Gene:tia1 / 394890 XenbaseID:XB-GENE-1002876 Length:389 Species:Xenopus tropicalis


Alignment Length:90 Identity:24/90 - (26%)
Similarity:47/90 - (52%) Gaps:5/90 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSSMGDQRGTRVYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFN-----PPGFAFVEFEHRDDAE 60
            :|::..|....|:||:|:.::..||::..|..:|:::...:..:     ..|:.||.|.::.|||
 Frog    97 VSTLRSQDHFHVFVGDLSPEITTDDIKAAFAPFGRISDARVVKDMTTGKSKGYGFVSFFNKWDAE 161

  Fly    61 KACDILNGSELLGSQLRVEISKGRP 85
            .|...:.|..|.|.|:|...:..:|
 Frog   162 NAIAQMGGQWLGGRQIRTNWATRKP 186

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rsf1NP_477001.2 RRM_SRSF3_like 11..82 CDD:409808 21/75 (28%)
tia1XP_012814227.2 RRM1_TIA1 8..81 CDD:410027
RRM2_TIA1 104..181 CDD:410030 21/76 (28%)
RRM3_TIAR 214..286 CDD:241064
Blue background indicates that the domain is not in the aligned region.

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