DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rsf1 and Srsf6

DIOPT Version :10

Sequence 1:NP_477001.2 Gene:Rsf1 / 34370 FlyBaseID:FBgn0011305 Length:200 Species:Drosophila melanogaster
Sequence 2:NP_001014207.2 Gene:Srsf6 / 362264 RGDID:1359241 Length:339 Species:Rattus norvegicus


Alignment Length:247 Identity:70/247 - (28%)
Similarity:94/247 - (38%) Gaps:83/247 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 RVYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFNPPGFAFVEFEHRDDAEKACDILNGSELLGSQ 75
            |||:|.|:..|::.|::..|:.||:|..:.:   ..|:.|||||...||:.|...||..||.|.:
  Rat     3 RVYIGRLSYNVREKDIQRFFSGYGRLLEIDL---KNGYGFVEFEDSRDADDAVYELNSKELCGER 64

  Fly    76 LRVEISKGRPRQGRRGGPMDRGGRRGDFGRHSITSGGSGGGGFRQRGSSGS-------------- 126
            :.||.::| ||:.|.|  ...|.|             |||||:..|.:||.              
  Rat    65 VIVEHARG-PRRDRDG--YSYGSR-------------SGGGGYSSRRTSGRDKYGPPVRTEYRLI 113

  Fly   127 ----SSR---------------------HTE---------RGYSSGRSGASSYNGREGGGSGF-- 155
                |||                     |.|         |.||..:......:|.|..|...  
  Rat   114 VENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIRL 178

  Fly   156 -------NRREVYGGGRDSSR-------YSSGSSASYGRTGGQSAGRFRSRS 193
                   :.|..|.|.|..||       .|..||.|..|:..:|..|.||||
  Rat   179 IEDKPRTSHRRSYSGSRSRSRSRRRSRSRSRRSSRSRSRSISKSRSRSRSRS 230

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rsf1NP_477001.2 RRM_SRSF3_like 11..82 CDD:409808 27/70 (39%)
Srsf6NP_001014207.2 RRM_SF 1..72 CDD:473069 27/71 (38%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 75..103 12/42 (29%)
RRM2_SRSF6 110..182 CDD:410159 11/71 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 176..339 17/55 (31%)

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