DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rsf1 and srsf2b

DIOPT Version :10

Sequence 1:NP_477001.2 Gene:Rsf1 / 34370 FlyBaseID:FBgn0011305 Length:200 Species:Drosophila melanogaster
Sequence 2:NP_955945.2 Gene:srsf2b / 323700 ZFINID:ZDB-GENE-030131-2420 Length:220 Species:Danio rerio


Alignment Length:200 Identity:72/200 - (36%)
Similarity:94/200 - (47%) Gaps:27/200 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 TRVYVGNLTDKVKKDDLEGEFTKYGKLNSVWI-----AFNPPGFAFVEFEHRDDAEKACDILNGS 69
            |.:.|.|||.:...:.|...|.|||::..|:|     .....|||||.|..:.|||.|.|.::|:
Zfish    14 TSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGA 78

  Fly    70 ELLGSQLRVEISK-GRPRQGRRGGPMDRGGRRGDFGRHSITSGGSGGGGFRQRGSSGS-SSRHTE 132
            .|.|.:|||:::: |||.....||  ..|||||        ||  ||||.|:.|:..| |.|...
Zfish    79 ILDGRELRVQMARYGRPPDSYYGG--GGGGRRG--------SG--GGGGSRRHGARRSRSPRRRR 131

  Fly   133 RGYSSGRSGASSYNGREGGGSGFNRREVYGGGRDSS-----RYSSGSSASYGRTGGQSAGRFRSR 192
            |..|..||.:.|   |.......:|...|...|..|     |.|...|.|..|:..:|..|.|||
Zfish   132 RSRSRSRSRSRS---RSRSRYSRSRSRSYSRSRSKSHTPNKRKSKSPSRSRSRSRSKSRSRSRSR 193

  Fly   193 SPVGN 197
            :|..|
Zfish   194 TPASN 198

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rsf1NP_477001.2 RRM_SRSF3_like 11..82 CDD:409808 28/75 (37%)
srsf2bNP_955945.2 RRM_SRSF2_SRSF8 16..88 CDD:409751 27/71 (38%)

Return to query results.
Submit another query.