DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rsf1 and srsf4

DIOPT Version :10

Sequence 1:NP_477001.2 Gene:Rsf1 / 34370 FlyBaseID:FBgn0011305 Length:200 Species:Drosophila melanogaster
Sequence 2:NP_955868.1 Gene:srsf4 / 321872 ZFINID:ZDB-GENE-030131-591 Length:366 Species:Danio rerio


Alignment Length:240 Identity:75/240 - (31%)
Similarity:98/240 - (40%) Gaps:71/240 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 TRVYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFNPPGFAFVEFEHRDDAEKACDILNGSELLGS 74
            :|||||.|:.:.::.|:|..|..|||:..|.:   ..|:.||||:...||:.|...|||.:|.|.
Zfish     2 SRVYVGKLSYRAREKDVERFFKGYGKILEVDL---KNGYGFVEFDDPRDADDAVYDLNGKDLCGK 63

  Fly    75 QLRVEISKGRPRQGRRGGPMDRGGRRGDFGRHSITSGGSGGGG---------------------- 117
            ::.||.:.|   |.|.||  :|.||...:||     ||.||||                      
Zfish    64 RVIVEHTIG---QRRDGG--NRSGRSNRYGR-----GGGGGGGDRYGPPTRTDYRLIVENLSSRC 118

  Fly   118 --------FRQRG----SSGSSSRHTE-----RGYSSGRSGASSYNGREGGG---------SGFN 156
                    .||.|    :..:..|..|     |.||..:......:|.|..|         .|..
Zfish   119 SWQDLKDYMRQAGEVTYADTNKGRKNEGVIEFRQYSDMKRALEKLDGTEVNGRKIRLIEDRPGAR 183

  Fly   157 RREVYGGGRDSSRYSSGS-----SASYGRT---GGQSAGRFRSRS 193
            ||..|  .|.:||..|.|     |.|:.||   .|.|..|.||||
Zfish   184 RRRSY--SRSASRSRSRSRRSRRSRSHSRTSSRSGASGSRSRSRS 226

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rsf1NP_477001.2 RRM_SRSF3_like 11..82 CDD:409808 28/70 (40%)
srsf4NP_955868.1 RRM_SF 1..81 CDD:473069 33/86 (38%)
RRM2_SRSF4 101..182 CDD:410157 11/80 (14%)

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