Protein Alignment Rsf1 and rsp-3

DIOPT Version :10

• Sequence 1: NP_477001.2
• Gene: Rsf1 / 34370
• FlyBaseID: FBgn0011305
• Length: 200
• Species: Drosophila melanogaster
• Sequence 2: NP_001370111.1
• Gene: rsp-3 / 176688
• WormBaseID: WBGene00004700
• Length: 258
• Species: Caenorhabditis elegans
• Alignment Length: 259
• Identity: 81/259 - (31%)
• Similarity: 107/259 - (41%)
• Gaps: 80/259 - (30%)

  Fly     5 GDQRGTRVYVGNLTDKVKKDDLEGEFTKYGKLNSVWI-AFNPPGFAFVEFEHRDDAEKACDILNG 68
            |.....:||||||...|::.::|..|.|||::..|.| :...|.|||||||...|||.|....:|
 Worm     4 GGSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDG 68

  Fly    69 SELLGSQLRVEISKGRPRQGRRGGPMDRGG--RRGDF--GRHSITSGGSGGGGFRQRG------- 122
            .|..|.::|||.::|...:|..|.|:..||  |.|||  ||    .||.|||..|:.|
 Worm    69 YEFDGRRIRVEFTRGVGPRGPGGRPLQDGGDHRGGDFRGGR----GGGRGGGPQRRTGYRVIVEG 129

  Fly   123 --SSGS----------------------------SSRHTERGYS---------SGRSGASSY--- 145
              .:||                            .:|:.:..|:         ....|.::|
 Worm   130 LPPTGSWQDLKDHMRDAGDVCYADVARDGTGVVEFTRYEDVKYAVRKLDDTKFRSHEGETAYIRV 194

  Fly   146 --NGREGGGSGFNRREVYGGGRDSSR-------------YSSGSSASYGRTGGQSAGRFRSRSP 194
              :...|||||       |||||.||             ||...|.|..|:..:|..|..||||
 Worm   195 REDNSSGGGSG-------GGGRDRSRSRSPRAERRASPKYSPRRSRSRSRSRSRSRSRSASRSP 251

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rsf1	NP_477001.2	RRM_SRSF3_like	11..82	CDD:409808	32/71 (45%)
rsp-3	NP_001370111.1	RRM1_SRSF1_like	10..80	CDD:409775	31/69 (45%)
		RRM2_SRSF1_like	123..196	CDD:410013	6/72 (8%)