DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rsf1 and Cstf2

DIOPT Version :10

Sequence 1:NP_477001.2 Gene:Rsf1 / 34370 FlyBaseID:FBgn0011305 Length:200 Species:Drosophila melanogaster
Sequence 2:NP_001345982.1 Gene:Cstf2 / 108062 MGIID:1343054 Length:603 Species:Mus musculus


Alignment Length:73 Identity:22/73 - (30%)
Similarity:40/73 - (54%) Gaps:5/73 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 VYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFN-----PPGFAFVEFEHRDDAEKACDILNGSEL 71
            |:|||:..:..::.|:..|::.|.:.|..:.::     |.|:.|.|::.::.|..|...|||.|.
Mouse    18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREF 82

  Fly    72 LGSQLRVE 79
            .|..|||:
Mouse    83 SGRALRVD 90

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rsf1NP_477001.2 RRM_SRSF3_like 11..82 CDD:409808 22/73 (30%)
Cstf2NP_001345982.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 22/73 (30%)
CSTF2_hinge 112..191 CDD:433869
CSTF_C 559..599 CDD:464130
Blue background indicates that the domain is not in the aligned region.

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