DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ror and Ntrk1

DIOPT Version :9

Sequence 1:NP_476962.1 Gene:Ror / 34367 FlyBaseID:FBgn0010407 Length:685 Species:Drosophila melanogaster
Sequence 2:NP_067600.1 Gene:Ntrk1 / 59109 RGDID:620144 Length:799 Species:Rattus norvegicus


Alignment Length:776 Identity:224/776 - (28%)
Similarity:335/776 - (43%) Gaps:212/776 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 FQQSSGICHIYNGTICRDVLSNAHVFVSP------------NLTMNDLEE-RLKAAYGVIKESKD 85
            |:...|:..:.:.||.:..|.    ||:|            ||:.|.||. ..|...|:..:...
  Rat    84 FEDLQGLGELRSLTIVKSGLR----FVAPDAFHFTPRLSHLNLSSNALESLSWKTVQGLSLQDLT 144

  Fly    86 MNANCRMYALPSLCFSSMPICRTPERTNL--LYFANVA-------------TNAKQLKNVSIRRK 135
            ::.|      |..|..::...:..|:.:|  :|...:.             .|:..:.:|.|:  
  Rat   145 LSGN------PLHCSCALLWLQRWEQEDLCGVYTQKLQGSGSGDQFLPLGHNNSCGVPSVKIQ-- 201

  Fly   136 RTKSKDIKNISIFKKKSTIYEDVFSTDISSKYPPTRESENLKRICREECELLENELCQKEYAIAK 200
                  :.|.|:     .:.:|||.                      :|::....|.|.::.:.:
  Rat   202 ------MPNDSV-----EVGDDVFL----------------------QCQVEGQALQQADWILTE 233

  Fly   201 RHPVIGMVGVEDCQKLPQHKDCLSLGITI-----EVDKTENCYWEDGSTYRGVANVSAS------ 254
                     :|....:.:..|..|||:|:     :::|.....|.:....|...:|..|      
  Rat   234 ---------LEGTATMKKSGDLPSLGLTLVNVTSDLNKKNVTCWAENDVGRAEVSVQVSVSFPAS 289

  Fly   255 ---GK------------------PCLRWSW---LMKEIS----DFPELIGQNY-----C---RNP 283
               ||                  |.|||.:   ::.|.|    .|.|....|.     |   ..|
  Rat   290 VHLGKAVEQHHWCIPFSVDGQPAPSLRWFFNGSVLNETSFIFTQFLESALTNETMRHGCLRLNQP 354

  Fly   284 GSVEN--------SPW---------CFVD----------------------SSRERIIELCDIPK 309
            ..|.|        :|:         .|:|                      :||:.:.:..:.| 
  Rat   355 THVNNGNYTLLAANPYGQAAASIMAAFMDNPFEFNPEDPIPVSFSPVDTNSTSRDPVEKKDETP- 418

  Fly   310 CADKIWIAIVGTTAAIILIFIIIFAIILFKRRTIMHYGMRNIHNINTP-----------SADKNI 363
                ..:::....|....:|:....::|.|      .|.|:...||.|           |.....
  Rat   419 ----FGVSVAVGLAVSAALFLSALLLVLNK------CGQRSKFGINRPAVLAPEDGLAMSLHFMT 473

  Fly   364 YGNSQLNNAQDAGRGNLGNLSDHVALNSKLIERNTLLRINHFTLQDVEFLEELGEGAFGKVYKGQ 428
            .|.|.|:..:..|.|    |..|:..|.:......   ::|...||:....||||||||||:..:
  Rat   474 LGGSSLSPTEGKGSG----LQGHIMENPQYFSDTC---VHHIKRQDIILKWELGEGAFGKVFLAE 531

  Fly   429 L--LQPNKTTITVAIKALKENASVKTQQDFKREIELISDLKHQNIVCILGVVLNKEPYCMLFEYM 491
            .  |..::..:.||:||||| .|...:|||.||.||::.|:||:||...||.....|..|:||||
  Rat   532 CYNLLNDQDKMLVAVKALKE-TSENARQDFHREAELLTMLQHQHIVRFFGVCTEGGPLLMVFEYM 595

  Fly   492 ANGDLHEFLISNSPTEGKSLSQLE-----------FLQIALQISEGMQYLSAHHYVHRDLAARNC 545
            .:|||:.||.|:.| :.|.|:..|           .|.:|.|::.||.||::.|:||||||.|||
  Rat   596 RHGDLNRFLRSHGP-DAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLASLHFVHRDLATRNC 659

  Fly   546 LVNEGLVVKISDFGLSRDIYSSDYYRVQSKSLLPVRWMPSESILYGKFTTESDVWSFGVVLWEIY 610
            ||.:||||||.|||:||||||:|||||..:::||:||||.|||||.||:|||||||||||||||:
  Rat   660 LVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFSTESDVWSFGVVLWEIF 724

  Fly   611 SYGMQPYYGFSNQEVINLIRSRQLLSAPENCPTAVYSLMIECWHEQSVKRPTFTDISNRLK 671
            :||.||:|..||.|.|..|...:.|..|..||..||::|..||..:..:|.:..|:..||:
  Rat   725 TYGKQPWYQLSNTEAIECITQGRELERPRACPPDVYAIMRGCWQREPQQRLSMKDVHARLQ 785

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RorNP_476962.1 CRD_TK_ROR_like 39..228 CDD:143568 36/216 (17%)
KR 235..312 CDD:214527 25/157 (16%)
PTKc_Ror 404..673 CDD:270642 142/281 (51%)
Pkinase_Tyr 410..670 CDD:285015 137/272 (50%)
Ntrk1NP_067600.1 leucine-rich repeat 68..92 CDD:275378 2/7 (29%)
LRR 1 90..113 6/26 (23%)
LRR_8 92..150 CDD:290566 14/67 (21%)
leucine-rich repeat 93..116 CDD:275378 6/26 (23%)
LRR 2 116..137 6/20 (30%)
leucine-rich repeat 117..139 CDD:275378 7/21 (33%)
leucine-rich repeat 140..152 CDD:275378 2/17 (12%)
TPKR_C2 151..194 CDD:293525 5/42 (12%)
I-set 196..284 CDD:254352 20/131 (15%)
Ig_TrkABC_d4 197..284 CDD:143173 20/130 (15%)
Ig_TrKABC_d5 301..382 CDD:143172 14/80 (18%)
Interaction with SQSTM1 472..493 6/24 (25%)
PKc_like 507..786 CDD:304357 142/281 (51%)
STYKc 513..784 CDD:214568 137/272 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG1026
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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