DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ror and ntrk3a

DIOPT Version :9

Sequence 1:NP_476962.1 Gene:Ror / 34367 FlyBaseID:FBgn0010407 Length:685 Species:Drosophila melanogaster
Sequence 2:NP_001243593.1 Gene:ntrk3a / 568668 ZFINID:ZDB-GENE-010126-3 Length:818 Species:Danio rerio


Alignment Length:837 Identity:228/837 - (27%)
Similarity:342/837 - (40%) Gaps:270/837 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 LLFTKKDVGSHNVDSRIYGFQQSSGICHIYNGTICRDVLSNAHVFVSPNLTMNDLEERLKAAYGV 79
            ||..:..|...|..:.:....::....||.|.::               .|:.||:..|....  
Zfish    56 LLALQDTVSDGNTTNSLPDLFENISTIHIENWSL---------------QTLKDLDMELYTGL-- 103

  Fly    80 IKESKDMN-ANCRMYALPSLCFSSMP------ICRTPERT-------NL----LYFANVATNAK- 125
                :.:| .||.:..:.|..|:..|      :.|.|..|       ||    |....|..|.. 
Zfish   104 ----QRLNIVNCNLRTIQSRAFAKNPHLRYINLSRNPLTTLSWQLFQNLQLLELKLEGVVFNCSC 164

  Fly   126 --------------------------------QLKNVSIRRKRTKSKDIKNISIFKKKSTIYE-- 156
                                            ||.|:|       ..|...||:.....|:.|  
Zfish   165 NIRWIQLWQQRGEAGLHNQQLFCFNGYSKIPLQLMNIS-------QCDFPEISVSHSNLTVTEGD 222

  Fly   157 -----------------------DVFSTDISSKYPPTRESENLK--RICREE------CELLENE 190
                                   ...:|..:::|||...|.||.  .:.|::      | :.|| 
Zfish   223 RVMITCNGSGIPVPEVDWTVGGLHSINTHQANQYPPNVHSINLTLVNVSRDDNGFMLTC-IAEN- 285

  Fly   191 LCQKEYAIAKRHPVIGM---------------VGVEDCQKLPQHKDCLSLGITIEVDKTENCYWE 240
                         ::||               :..|:.||  :|..|:                 
Zfish   286 -------------IVGMTNASIQLSVQFPPAIINFEEPQK--RHDTCM----------------- 318

  Fly   241 DGSTYRGVANVSASGKPCLRWSWLMKEISD----FPE-------LIGQNYCRNPGSVENSPWC-- 292
                   :..|.|:..|.|.||:..:||..    .||       |.|....:||....|..:.  
Zfish   319 -------MFTVRANPLPTLHWSFKGEEIKATEYVHPEMEVYQDNLEGCLLFKNPTQHNNGNYTLE 376

  Fly   293 --------------------------FVDSSRERIIELCDIPKCADKIWIAI-VGTTAAIILIFI 330
                                      :|..:...|..:...|: .|...::| ||......::.:
Zfish   377 ARNYLGVAVKTVYAHFLHPPFEDYPDYVSPTPTAIPTMTHRPE-EDTFGVSIAVGLAGFACVLLV 440

  Fly   331 IIFAII-LFKRRTIMHYGMRN--------------IHNIN----TP-----SADKNIYGNSQ--- 368
            ::|.:| .:.||:  .:||:.              :|::|    ||     ..|..:.|.::   
Zfish   441 VMFVLINKYGRRS--KFGMKGPVAVISGEEDSASPLHHVNHGIITPCTLDAGPDAVVIGMTRIPV 503

  Fly   369 LNNAQDAGRGNLGNLSDHVALNSKLIERNTLLRINHFTLQDVEFLEELGEGAFGKVYKGQL--LQ 431
            :.|.|....|:..|              .....:.|...:|:....||||||||||:..:.  |.
Zfish   504 IENPQYFRHGHNCN--------------KPATYVQHIKRRDIVLKRELGEGAFGKVFLAECYNLS 554

  Fly   432 PNKTTITVAIKALKENASVKTQQDFKREIELISDLKHQNIVCILGVVLNKEPYCMLFEYMANGDL 496
            |.|..:.||:|.||: .::..::||:||.||:::|:|::||...||.::.:|..|:||||.:|||
Zfish   555 PTKDKMLVAVKTLKD-PTLAARKDFQREAELLTNLQHEHIVKFYGVCVDGDPLIMVFEYMKHGDL 618

  Fly   497 HEFLISNSP------------TEGK-SLSQLEFLQIALQISEGMQYLSAHHYVHRDLAARNCLVN 548
            ::||.::.|            |.|: .|||:  |.||.||:.||.||.:.|:||||||.|||||.
Zfish   619 NKFLRAHGPDAMILVDGQPLQTNGELGLSQM--LHIASQIASGMVYLGSQHFVHRDLATRNCLVG 681

  Fly   549 EGLVVKISDFGLSRDIYSSDYYRVQSKSLLPVRWMPSESILYGKFTTESDVWSFGVVLWEIYSYG 613
            .||:|||.|||:||||||:|||||...::||:||||.|||:|.|||||||||||||:||||::||
Zfish   682 NGLLVKIGDFGMSRDIYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYG 746

  Fly   614 MQPYYGFSNQEVINLIRSRQLLSAPENCPTAVYSLMIECWHEQSVKRPTFTDISNRL 670
            .||::..:|.|||..|...::|..|..||..||.:|:.||..:..:|....||...|
Zfish   747 KQPWFQLANNEVIECITQGRVLERPRLCPKEVYDIMLGCWQREPQQRLNIKDIQKIL 803

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RorNP_476962.1 CRD_TK_ROR_like 39..228 CDD:143568 48/287 (17%)
KR 235..312 CDD:214527 18/115 (16%)
PTKc_Ror 404..673 CDD:270642 138/282 (49%)
Pkinase_Tyr 410..670 CDD:285015 135/274 (49%)
ntrk3aNP_001243593.1 LRR_8 101..157 CDD:290566 12/61 (20%)
leucine-rich repeat 103..126 CDD:275378 5/28 (18%)
leucine-rich repeat 127..150 CDD:275378 5/22 (23%)
TPKR_C2 161..205 CDD:293525 5/50 (10%)
I-set 207..298 CDD:254352 17/105 (16%)
Ig_TrkABC_d4 208..298 CDD:143173 17/104 (16%)
Ig 316..393 CDD:299845 16/100 (16%)
PTKc_TrkC 525..811 CDD:270676 138/282 (49%)
STYKc 531..803 CDD:214568 135/274 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG1026
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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