DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment CG5708 and lmo3

DIOPT Version :9

Sequence 1:	NP_001285799.1	Gene:	CG5708 / 34361	FlyBaseID:	FBgn0032196	Length:	241	Species:	Drosophila melanogaster
Sequence 2:	NP_001315524.1	Gene:	lmo3 / 553774	ZFINID:	ZDB-GENE-050522-201	Length:	167	Species:	Danio rerio

Alignment Length:	164	Identity:	62/164 - (37%)
Similarity:	89/164 - (54%)	Gaps:	18/164 - (10%)

- Green bases have known domain annotations that are detailed below.

  Fly    56 MDESSNDFNNQQL-IHSNSLIKVCGGCGDKISDRYLLYALDRYWHNGCLKCHCCGAMLAEVGSSC 119
            |.:....|..|.| :..::..|.|.||..||.|||||.|||:|||..||||.||...|.||||:.
Zfish    12 MQKREKSFGIQMLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTL 76

  Fly   120 FTRRGLILCKKDYSSMFGCSGVCSGCGETIPPSELVAKALTGINNIDLQNQQKQIINCVFHLRCF 184
            :|:..||||::||..:||.:|.|:.|.:.||..|:|.:|...                |:||.||
Zfish    77 YTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKEN----------------VYHLDCF 125

  Fly   185 SCAKCGSSLRPGDRYTMLGASLVCEQDWHK-LLK 217
            :|..|......||::.:....::|:.|:.: |:|
Zfish   126 ACQLCNQRFCVGDKFFLKNNMILCQTDYEEGLMK 159

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
CG5708	NP_001285799.1	LIM1_LMO4	78..132	CDD:188772	32/53 (60%)
CG5708	NP_001285799.1	LIM	142..212	CDD:413332	17/69 (25%)
lmo3	NP_001315524.1	LIM1_LMO1_LMO3	35..89	CDD:188774	32/53 (60%)
lmo3	NP_001315524.1	LIM2_LMO1_LMO3	99..153	CDD:188775	17/69 (25%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	1	1.000	-	-
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0000888
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	3	2.910