DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5708 and lhx5

DIOPT Version :10

Sequence 1:NP_609359.1 Gene:CG5708 / 34361 FlyBaseID:FBgn0032196 Length:241 Species:Drosophila melanogaster
Sequence 2:NP_001016082.1 Gene:lhx5 / 548836 XenbaseID:XB-GENE-490400 Length:402 Species:Xenopus tropicalis


Alignment Length:136 Identity:52/136 - (38%)
Similarity:66/136 - (48%) Gaps:22/136 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    78 CGGCGDKISDRYLLYALDRYWHNGCLKCHCCGAMLAEVGSSCFTRRGLILCKKDYSSMFGCSGVC 142
            |.||...|.||:||..|||.||..|::|..|...|.|   .||:|.|.:.||.|:...||..  |
 Frog     5 CAGCERPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKTDFFRRFGTK--C 64

  Fly   143 SGCGETIPPSELVAKALTGINNIDLQNQQKQIINCVFHLRCFSCAKCGSSLRPGDR-YTMLGASL 206
            :||...|.||:||.||.                |.||||.||:|..|...|..|:. |.:.....
 Frog    65 AGCSLGISPSDLVRKAR----------------NKVFHLNCFTCMVCNKQLSTGEELYIIDENKF 113

  Fly   207 VCEQDW 212
            ||::|:
 Frog   114 VCKEDY 119

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5708NP_609359.1 LIM1_LMO4 78..132 CDD:188772 24/53 (45%)
LIM 142..212 CDD:413332 24/70 (34%)
lhx5NP_001016082.1 LIM1_Lhx1_Lhx5 5..56 CDD:188753 24/53 (45%)
LIM2_Lhx1_Lhx5 64..119 CDD:188761 24/70 (34%)
Homeodomain 181..237 CDD:459649
Blue background indicates that the domain is not in the aligned region.

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