DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5708 and lhx6a

DIOPT Version :10

Sequence 1:NP_609359.1 Gene:CG5708 / 34361 FlyBaseID:FBgn0032196 Length:241 Species:Drosophila melanogaster
Sequence 2:NP_001004015.1 Gene:lhx6a / 445565 ZFINID:ZDB-GENE-041025-1 Length:375 Species:Danio rerio


Alignment Length:153 Identity:49/153 - (32%)
Similarity:68/153 - (44%) Gaps:22/153 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    77 VCGGCGDKISDRYLLYALDRYWHNGCLKCHCCGAMLAEVGSSCFTRRGLILCKKDYSSMFGCSGV 141
            ||..||.:|.|||||...:..||..||:|..|...|.: .|||:.:...|.||.||.|.||..  
Zfish    96 VCASCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQ-HSSCYIKNKEIFCKMDYFSRFGTK-- 157

  Fly   142 CSGCGETIPPSELVAKALTGINNIDLQNQQKQIINCVFHLRCFSCAKCGSSLRPGDRYTMLGASL 206
            |:.||..|..|:.|.:|...                .:||.||:|..|...|..|:.:.::...:
Zfish   158 CARCGRQIYASDWVRRARGN----------------AYHLACFACFSCKRQLSTGEEFGLVEEKV 206

  Fly   207 VCEQDWHKL---LKGPANSNGTL 226
            :|...:..:   ||..|.|...|
Zfish   207 LCRIHYDTMVENLKRAAESGSGL 229

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5708NP_609359.1 LIM1_LMO4 78..132 CDD:188772 22/53 (42%)
LIM 142..212 CDD:413332 16/69 (23%)
lhx6aNP_001004015.1 LIM1_Lhx6 97..150 CDD:188766 22/53 (42%)
LIM2_Lhx6 158..212 CDD:188768 16/69 (23%)
Homeodomain 247..303 CDD:459649
Blue background indicates that the domain is not in the aligned region.

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