DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5708 and LHX8

DIOPT Version :10

Sequence 1:NP_609359.1 Gene:CG5708 / 34361 FlyBaseID:FBgn0032196 Length:241 Species:Drosophila melanogaster
Sequence 2:XP_016856805.1 Gene:LHX8 / 431707 HGNCID:28838 Length:363 Species:Homo sapiens


Alignment Length:152 Identity:46/152 - (30%)
Similarity:66/152 - (43%) Gaps:23/152 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    77 VCGGCGDKISDRYLLYALDRYWHNGCLKCHCCGAMLAEVGSSCFTRRGLILCKKDYSSMFGCSGV 141
            ||..||.:|.|:|||...|..||..||.|..|...|.. .:||:.:...|.||.||...:|..  
Human    64 VCNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYGTR-- 125

  Fly   142 CSGCGETIPPSELVAKALTGINNIDLQNQQKQIINCVFHLRCFSCAKCGSSLRPGDRYTMLGASL 206
            ||.||..|..::.|.:|...                |:||.||:|..|...|..|:.:.::...:
Human   126 CSRCGRHIHSTDWVRRAKGN----------------VYHLACFACFSCKRQLSTGEEFALVEEKV 174

  Fly   207 VCEQDWHKLL----KGPANSNG 224
            :|...:..:|    :...|.||
Human   175 LCRVHYDCMLDNLKREVENGNG 196

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5708NP_609359.1 LIM1_LMO4 78..132 CDD:188772 21/53 (40%)
LIM 142..212 CDD:413332 17/69 (25%)
LHX8XP_016856805.1 LIM1_Lhx7_Lhx8 64..119 CDD:188767 23/55 (42%)
LIM2_Lhx7_Lhx8 126..180 CDD:188769 17/69 (25%)
Homeodomain 216..272 CDD:459649
Blue background indicates that the domain is not in the aligned region.

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