DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5708 and isl1b

DIOPT Version :10

Sequence 1:NP_609359.1 Gene:CG5708 / 34361 FlyBaseID:FBgn0032196 Length:241 Species:Drosophila melanogaster
Sequence 2:NP_001002043.1 Gene:isl1b / 415131 ZFINID:ZDB-GENE-040624-1 Length:323 Species:Danio rerio


Alignment Length:168 Identity:48/168 - (28%)
Similarity:71/168 - (42%) Gaps:22/168 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 NDFNNQQLIHSNSLIKVCGGCGDKISDRYLL-YALDRYWHNGCLKCHCCGAMLAEVGSSCFTRRG 124
            :|...||  :...|...|.|||.:|.||::: .:.|..||..||||..|...|.| ..:||.|.|
Zfish     4 SDMGEQQ--NRTKLSSFCVGCGLEILDRFIVRVSPDLEWHARCLKCAECHQFLDE-SCTCFIRDG 65

  Fly   125 LILCKKDYSSMFGCSGVCSGCGETIPPSELVAKALTGINNIDLQNQQKQIINCVFHLRCFSCAKC 189
            ...|::.||.:  .:..|:.|.:.....|.|.::...|                :|::||.|..|
Zfish    66 KTFCREHYSRL--STSKCAKCDKAFISKEFVMRSQVNI----------------YHVQCFRCEGC 112

  Fly   190 GSSLRPGDRYTMLGASLVCEQDWHKLLKGPANSNGTLG 227
            ...|..||.|.:....|:|....:||:....|.....|
Zfish   113 NRPLLSGDEYVLQDGQLLCTDHHNKLMSASINQQKEAG 150

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5708NP_609359.1 LIM1_LMO4 78..132 CDD:188772 22/54 (41%)
LIM 142..212 CDD:413332 16/69 (23%)
isl1bNP_001002043.1 LIM1_Isl 19..73 CDD:188752 22/54 (41%)
LIM 81..135 CDD:413332 16/69 (23%)
HOX 174..228 CDD:197696
Blue background indicates that the domain is not in the aligned region.

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