DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5708 and Lmx1a

DIOPT Version :10

Sequence 1:NP_609359.1 Gene:CG5708 / 34361 FlyBaseID:FBgn0032196 Length:241 Species:Drosophila melanogaster
Sequence 2:NP_729801.1 Gene:Lmx1a / 39406 FlyBaseID:FBgn0052105 Length:640 Species:Drosophila melanogaster


Alignment Length:208 Identity:65/208 - (31%)
Similarity:87/208 - (41%) Gaps:27/208 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 NSNHTKDTVETNSNISSSQLSFMDESSNDFNNQQLIHSNSLIKVCGGCGDKISDRYLLYALDRYW 98
            |.|.......|.|..::|:||.......:..:   |......::|.|||.||.||:|:...|..|
  Fly   234 NGNGNGGGAATASAAAASKLSADCSGRTEVGH---IKCEKNFELCEGCGQKIHDRFLMNVGDANW 295

  Fly    99 HNGCLKCHCCGAMLAEVGSSCFTRRGLILCKKDYSSMFGCSGVCSGCGETIPPSELVAKALTGIN 163
            |..||.|..||..|..   :|:.|...:.||.||..:||..  ||.|...|.|.|||        
  Fly   296 HEQCLACCYCGMQLHH---TCYVRNSKLYCKMDYDRLFGVK--CSSCCHAILPQELV-------- 347

  Fly   164 NIDLQNQQKQIINCVFHLRCFSCAKCGSSLRPGDRYTMLGASLVC-EQDWHK---LLKGPANSNG 224
                   .:.|.|.||||.||.|..|...|:.|:::.:....|.| ..|..|   |....|...|
  Fly   348 -------MRPIPNFVFHLPCFVCYACRLPLQKGEQFMLRDGQLFCYRHDLEKEMFLAAAAAQHCG 405

  Fly   225 TLGQRKGKVGRPR 237
            .:|..:..:.|||
  Fly   406 FVGLDEEDLLRPR 418

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5708NP_609359.1 LIM1_LMO4 78..132 CDD:188772 22/53 (42%)
LIM 142..212 CDD:413332 22/70 (31%)
Lmx1aNP_729801.1 LIM1_Lmx1b 275..327 CDD:188757 23/54 (43%)
LIM 333..388 CDD:413332 22/71 (31%)
Homeodomain 425..481 CDD:459649
Blue background indicates that the domain is not in the aligned region.

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