DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5708 and Awh

DIOPT Version :10

Sequence 1:NP_609359.1 Gene:CG5708 / 34361 FlyBaseID:FBgn0032196 Length:241 Species:Drosophila melanogaster
Sequence 2:NP_001261379.1 Gene:Awh / 38451 FlyBaseID:FBgn0013751 Length:287 Species:Drosophila melanogaster


Alignment Length:99 Identity:21/99 - (21%)
Similarity:40/99 - (40%) Gaps:28/99 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 REEEEDRSERASERLEEEMMEEGPPAPKMLRMVYFVG----AGFLCTFAINKWR----------- 69
            ::.|::|        ::|.|::...:|:::.|..|.|    .|.|......||.           
  Fly   175 KDMEKER--------KKEKMKQYVQSPEVMEMCRFAGEIGIRGDLLRELRFKWAREKMDDAEFYE 231

  Fly    70 --EMER---NSLLKQEQEKNQQGDVGLLPRDSVQ 98
              |.:|   ||:.:.|....:..:.|.:|.|.|:
  Fly   232 SLEQQRDLDNSIRESETVDGEVEEEGFVPSDEVE 265

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5708NP_609359.1 LIM1_LMO4 78..132 CDD:188772 5/21 (24%)
LIM 142..212 CDD:413332
AwhNP_001261379.1 LIM1_AWH 8..61 CDD:188759
LIM2_AWH 69..123 CDD:188765
Homeodomain 149..205 CDD:459649 8/37 (22%)
Blue background indicates that the domain is not in the aligned region.

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