Protein Alignment CG5708 and Lhx4

DIOPT Version :10

• Sequence 1: NP_609359.1
• Gene: CG5708 / 34361
• FlyBaseID: FBgn0032196
• Length: 241
• Species: Drosophila melanogaster
• Sequence 2: NP_001101818.2
• Gene: Lhx4 / 360858
• RGDID: 1308044
• Length: 390
• Species: Rattus norvegicus
• Alignment Length: 164
• Identity: 57/164 - (34%)
• Similarity: 80/164 - (48%)
• Gaps: 30/164 - (18%)

  Fly    75 IKVCGGCGDKISDRYLLYALDRYWHNGCLKCHCCGAMLAEVGSSCFTRRGLILCKKDYSSMFGCS 139
            |..|.||...|.|:::|..|||:||:.||||..|...||:   .||:|.|.:.||:|:...||..
  Rat    27 IPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRFGTK 88

  Fly   140 GVCSGCGETIPPSELVAKALTGINNIDLQNQQKQIINCVFHLRCFSCAKCGSSLRPGDR-YTMLG 203
              |:.|.:.|||:::|.||.                :.|:||.||:|..|...|..||. |.|..
  Rat    89 --CTACQQGIPPTQVVRKAQ----------------DFVYHLHCFACIICNRQLATGDEFYLMED 135

  Fly   204 ASLVCEQDWHKLLKGPANSNGTLGQRKGKVGRPR 237
            ..|||::|:.   ....|.:...|.:     |||
  Rat   136 GRLVCKEDYE---TAKQNDDSEAGAK-----RPR 161

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG5708	NP_609359.1	LIM1_LMO4	78..132	CDD:188772	24/53 (45%)
		LIM	142..212	CDD:413332	23/70 (33%)
Lhx4	NP_001101818.2	LIM1_Lhx4	30..81	CDD:188852	24/53 (45%)
		LIM2_Lhx3_Lhx4	89..144	CDD:188762	23/70 (33%)
		Homeodomain	158..214	CDD:459649	3/9 (33%)