Protein Alignment CG5708 and ap

DIOPT Version :10

• Sequence 1: NP_609359.1
• Gene: CG5708 / 34361
• FlyBaseID: FBgn0032196
• Length: 241
• Species: Drosophila melanogaster
• Sequence 2: NP_724428.1
• Gene: ap / 35509
• FlyBaseID: FBgn0267978
• Length: 469
• Species: Drosophila melanogaster
• Alignment Length: 281
• Identity: 83/281 - (29%)
• Similarity: 117/281 - (41%)
• Gaps: 70/281 - (24%)

  Fly     4 TFHSYRDILAAHHQDSSSPENFAPIVIDYRNSNHTKDTVETNSNISSSQLSFMDESSNDFNNQQL 68
            :|.||.....|..:||:     |...|....::.|:.:.||.|.||.....|...||.:..:...
  Fly    81 SFRSYETADRATFEDSA-----AKFSISRSRTDCTEVSDETTSGISFKTEPFGPPSSPESTSDSK 140

  Fly    69 IHSNSLIKVCGGCGDKISDRYLLYALDRYWHNGCLKCHCCGAMLAEVGSSCFTRRGLILCKKDYS 133
            |..|  :..|.|||.:|.||:.|.|:::.||..||:|:.|...| |..|||::|.|.|.||.||.
  Fly   141 ITRN--LDDCSGCGRQIQDRFYLSAVEKRWHASCLQCYACRQPL-ERESSCYSRDGNIYCKNDYY 202

  Fly   134 SMFGCSGVCSGCGETIPPSELVAKALTGINNIDLQNQQKQIINCVFHLRCFSCAKCGSSLRPGDR 198
            |.|| :..||.|..:|..:|||.:|.                |.|||:.||.|..|.:.|..||:
  Fly   203 SFFG-TRRCSRCLASISSNELVMRAR----------------NLVFHVNCFCCTVCHTPLTKGDQ 250

  Fly   199 YTMLGASLVCEQDWHKLLKG------------------------------PANS----------- 222
            |.::.|.:.|...:....:|                              |:.|
  Fly   251 YGIIDALIYCRTHYSIAREGDTASSSMSATYPYSAQFGSPHNDSSSPHSDPSRSIVPTGIFVPAS 315

  Fly   223 ---NGTLGQRKGKVGRPRRSK 240
               || |.|...:.||||:.|
  Fly   316 HVING-LPQPARQKGRPRKRK 335

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG5708	NP_609359.1	LIM1_LMO4	78..132	CDD:188772	25/53 (47%)
		LIM	142..212	CDD:413332	22/69 (32%)
ap	NP_724428.1	LIM1_Lhx2_Lhx9	148..201	CDD:188755	25/53 (47%)
		LIM2_Lhx2_Lhx9	206..264	CDD:188763	23/74 (31%)
		Homeodomain	368..424	CDD:459649