Protein Alignment CG5708 and Lim3

DIOPT Version :10

• Sequence 1: NP_609359.1
• Gene: CG5708 / 34361
• FlyBaseID: FBgn0032196
• Length: 241
• Species: Drosophila melanogaster
• Sequence 2: NP_001260559.1
• Gene: Lim3 / 35184
• FlyBaseID: FBgn0002023
• Length: 555
• Species: Drosophila melanogaster
• Alignment Length: 176
• Identity: 60/176 - (34%)
• Similarity: 85/176 - (48%)
• Gaps: 29/176 - (16%)

  Fly    68 LIHSN----SLIKVCGGCGDKISDRYLLYALDRYWHNGCLKCHCCGAMLAEVGSSCFTRRGLILC 128
            ||..|    :.|..||||.:.|.||::|..|:|.||..||:|..|...|   ...||.|.|.:.|
  Fly   108 LISRNRALEATIPKCGGCHELILDRFILKVLERTWHAKCLQCSECHGQL---NDKCFARNGQLFC 169

  Fly   129 KKDYSSMFGCSGVCSGCGETIPPSELVAKALTGINNIDLQNQQKQIINCVFHLRCFSCAKCGSSL 193
            |:|:...:|..  ||.|...|||:::|.:|...                |:||:||.||.|..:|
  Fly   170 KEDFFKRYGTK--CSACDMGIPPTQVVRRAQDN----------------VYHLQCFLCAMCSRTL 216

  Fly   194 RPGDR-YTMLGASLVCEQDWHKLLKGPANSNGTL-GQRKGKVGRPR 237
            ..||. |.|....|:|::|:.:........:|:| |.:..|  |||
  Fly   217 NTGDEFYLMEDRKLICKRDYEEAKAKGLYLDGSLDGDQPNK--RPR 260

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG5708	NP_609359.1	LIM1_LMO4	78..132	CDD:188772	23/53 (43%)
		LIM	142..212	CDD:413332	23/70 (33%)
Lim3	NP_001260559.1	LIM1_Lhx3_Lhx4	122..173	CDD:188754	23/53 (43%)
		LIM2_Lhx3_Lhx4	181..236	CDD:188762	23/70 (33%)
		Homeodomain	257..313	CDD:459649	4/6 (67%)