DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5708 and Lhx6

DIOPT Version :10

Sequence 1:NP_609359.1 Gene:CG5708 / 34361 FlyBaseID:FBgn0032196 Length:241 Species:Drosophila melanogaster
Sequence 2:NP_001101307.2 Gene:Lhx6 / 311901 RGDID:1306174 Length:392 Species:Rattus norvegicus


Alignment Length:152 Identity:46/152 - (30%)
Similarity:67/152 - (44%) Gaps:23/152 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    77 VCGGCGDKISDRYLLYALDRYWHNGCLKCHCCGAMLAEVGSSCFTRRGLILCKKDYSSMFGCSGV 141
            :|..||.:|.|||||...:..||..||:|..|...|.: .:||:.:...|.||.||.|.||..  
  Rat    98 ICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQ-QNSCYIKNKEIYCKMDYFSRFGTK-- 159

  Fly   142 CSGCGETIPPSELVAKALTGINNIDLQNQQKQIINCVFHLRCFSCAKCGSSLRPGDRYTMLGASL 206
            |:.||..|..|:.|.:|...                .:||.||:|..|...|..|:.:.::...:
  Rat   160 CARCGRQIYASDWVRRARGN----------------AYHLACFACFSCKRQLSTGEEFGLVEEKV 208

  Fly   207 VCEQDW----HKLLKGPANSNG 224
            :|...:    ..|.:...|.||
  Rat   209 LCRIHYDTMIENLKRAAENGNG 230

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5708NP_609359.1 LIM1_LMO4 78..132 CDD:188772 21/53 (40%)
LIM 142..212 CDD:413332 16/69 (23%)
Lhx6NP_001101307.2 LIM1_Lhx6 99..152 CDD:188766 21/53 (40%)
LIM2_Lhx6 160..214 CDD:188768 16/69 (23%)
Homeodomain 249..305 CDD:459649
Blue background indicates that the domain is not in the aligned region.

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