Protein Alignment CG5708 and lhx1a

DIOPT Version :10

• Sequence 1: NP_609359.1
• Gene: CG5708 / 34361
• FlyBaseID: FBgn0032196
• Length: 241
• Species: Drosophila melanogaster
• Sequence 2: NP_571291.1
• Gene: lhx1a / 30463
• ZFINID: ZDB-GENE-980526-347
• Length: 405
• Species: Danio rerio
• Alignment Length: 148
• Identity: 52/148 - (35%)
• Similarity: 71/148 - (47%)
• Gaps: 28/148 - (18%)

  Fly    78 CGGCGDKISDRYLLYALDRYWHNGCLKCHCCGAMLAEVGSSCFTRRGLILCKKDYSSMFGCSGVC 142
            |.||...|.||:||..|||.||..|::|..|...|.|   .||:|.|.:.||.|:...||..  |
Zfish     4 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRRFGTK--C 63

  Fly   143 SGCGETIPPSELVAKALTGINNIDLQNQQKQIINCVFHLRCFSCAKCGSSLRPGDR-YTMLGASL 206
            :||.:.|.|::||.:|.:.                ||||.||:|..|...|..|:. |.:.....
Zfish    64 AGCAQGISPNDLVRRARSK----------------VFHLNCFTCMMCNKQLSTGEELYIIDENKF 112

  Fly   207 VCEQDWHKLLKGPANSNG 224
            ||:.|:      .:|:||
Zfish   113 VCKDDY------LSNTNG 124

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG5708	NP_609359.1	LIM1_LMO4	78..132	CDD:188772	24/53 (45%)
		LIM	142..212	CDD:413332	21/70 (30%)
lhx1a	NP_571291.1	LIM1_Lhx1_Lhx5	4..55	CDD:188753	24/53 (45%)
		LIM2_Lhx1_Lhx5	63..118	CDD:188761	21/70 (30%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	158..184
		Homeodomain	180..236	CDD:459649
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	296..373