DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5708 and Lhx2

DIOPT Version :10

Sequence 1:NP_609359.1 Gene:CG5708 / 34361 FlyBaseID:FBgn0032196 Length:241 Species:Drosophila melanogaster
Sequence 2:XP_006234134.1 Gene:Lhx2 / 296706 RGDID:71076 Length:414 Species:Rattus norvegicus


Alignment Length:241 Identity:74/241 - (30%)
Similarity:97/241 - (40%) Gaps:80/241 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 DTVETNSNISSSQLSFMDESSNDFNNQQLIHSNSLIKVCGGCGDKISDRYLLYALDRYWHNGCLK 104
            ||..|..:|||.:.:                      :|.|||.||||||.|.|:|:.||..|||
  Rat    37 DTETTMPSISSDRAA----------------------LCAGCGGKISDRYYLLAVDKQWHMRCLK 79

  Fly   105 CHCCGAMLAEVGSSCFTRRGLILCKKDYSS--------MFGCSGVCSGCGETIPPSELVAKALTG 161
            |..|...| |...:||::.|.|.||:||.|        .|.... |:.|...|..||:|.:|.  
  Rat    80 CCECKLNL-ESELTCFSKDGSIYCKEDYYSPSLHGPHRRFSVQR-CARCHLGISASEMVMRAR-- 140

  Fly   162 INNIDLQNQQKQIINCVFHLRCFSCAKCGSSLRPGDRYTMLGASLVCEQDWHKLLKG--PANSN- 223
                ||          |:||.||:|..|...|..||.:.|..:.:.|...:..||:|  ||:.| 
  Rat   141 ----DL----------VYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPAHFNH 191

  Fly   224 ------------------GTLGQRK---------GKV--GRPRRSK 240
                              |:.|...         |.|  ||||:.|
  Rat   192 ADVAAAAAAAAAAKSAGLGSAGANPLGLPYYNGVGTVQKGRPRKRK 237

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5708NP_609359.1 LIM1_LMO4 78..132 CDD:188772 28/53 (53%)
LIM 142..212 CDD:413332 21/69 (30%)
Lhx2XP_006234134.1 LIM1_Lhx2 43..106 CDD:188853 31/85 (36%)
LIM2_Lhx2_Lhx9 119..177 CDD:188763 21/74 (28%)
COG5576 <255..386 CDD:227863
Homeodomain 275..331 CDD:459649
Blue background indicates that the domain is not in the aligned region.

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