DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5708 and Lhx9

DIOPT Version :10

Sequence 1:NP_609359.1 Gene:CG5708 / 34361 FlyBaseID:FBgn0032196 Length:241 Species:Drosophila melanogaster
Sequence 2:XP_006249976.1 Gene:Lhx9 / 289048 RGDID:727956 Length:397 Species:Rattus norvegicus


Alignment Length:181 Identity:63/181 - (34%)
Similarity:85/181 - (46%) Gaps:36/181 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    77 VCGGCGDKISDRYLLYALDRYWHNGCLKCHCCGAMLA-EVGSSCFTRRGLILCKKDYSSMFGCSG 140
            :|.|||.||||||.|.|:|:.||..|||  ||...|| |...:||.:.|.|.||:||...|....
  Rat    70 LCAGCGGKISDRYYLLAVDKQWHLRCLK--CCECKLALESELTCFAKDGSIYCKEDYYRRFSVQR 132

  Fly   141 VCSGCGETIPPSELVAKALTGINNIDLQNQQKQIINCVFHLRCFSCAKCGSSLRPGDRYTMLGAS 205
             |:.|...|..||:|.:|.                :.|:||.||:|:.|..:|..||.:.|..:.
  Rat   133 -CARCHLGISASEMVMRAR----------------DSVYHLSCFTCSTCNKTLTTGDHFGMKDSL 180

  Fly   206 LVCEQDWHKLLKG---PANSNGTLGQRKG-------------KVGRPRRSK 240
            :.|...:..||:|   |..|...|..:.|             :.||||:.|
  Rat   181 VYCRAHFETLLQGEYPPQLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK 231

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5708NP_609359.1 LIM1_LMO4 78..132 CDD:188772 29/54 (54%)
LIM 142..212 CDD:413332 19/69 (28%)
Lhx9XP_006249976.1 LIM1_Lhx2 61..124 CDD:188853 29/55 (53%)
LIM2_Lhx2_Lhx9 129..187 CDD:188763 19/74 (26%)
Homeodomain 268..324 CDD:459649
Blue background indicates that the domain is not in the aligned region.

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