Protein Alignment CG5708 and lim-4

DIOPT Version :10

• Sequence 1: NP_609359.1
• Gene: CG5708 / 34361
• FlyBaseID: FBgn0032196
• Length: 241
• Species: Drosophila melanogaster
• Sequence 2: NP_508669.1
• Gene: lim-4 / 180672
• WormBaseID: WBGene00002987
• Length: 355
• Species: Caenorhabditis elegans
• Alignment Length: 242
• Identity: 63/242 - (26%)
• Similarity: 104/242 - (42%)
• Gaps: 54/242 - (22%)

  Fly    27 PIVIDYRNSNH--TKDTVETNSNI-------SSSQLSFMDESS---------NDF----NNQQLI 69
            |.:.||.:|..  |.|.|...||:       ::.:.|..||||         .|:    ::...|
 Worm    25 PFIGDYLSSPSLTTSDYVSDCSNLTVEGPVPANQEFSSSDESSVYISSALRLADYAFTPDDNIRI 89

  Fly    70 HSNSLIKVCGGCGDKISDRYLLYALDRYWHNGCLKCHCCGAMLAEVGSSCFTRRGLILCKKDY-- 132
            ..:::|.:|..|..:|.|::.|....|.:|..||:|..|...|:   :.||.:.....||..|
 Worm    90 KPDAVIVICTQCQHQIQDKFFLSIDGRNYHENCLQCSTCENPLS---NKCFYKDKTFYCKGCYFR 151

  Fly   133 ----SSMFGCSGV---CSGCGETIPPSELVAKALTGINNIDLQNQQKQIINCVFHLRCFSCAKCG 190
                |:...|..:   |:.|..||..::.|.:|.                |.|:||.||||.:|.
 Worm   152 THVTSTASSCRELGPKCASCDRTIQATDWVRRAR----------------NYVYHLACFSCNQCK 200

  Fly   191 SSLRPGDRYTMLGASLVCEQDWHKLLKGPANSNGTLGQRKGKVGRPR 237
            ..|..|:.|.:...:|:|:|.:.:|::|.:.    :..:|.|..|.|
 Worm   201 RQLSTGEEYALQEGNLLCKQHFLELVEGDSG----VSSQKAKTKRVR 243

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG5708	NP_609359.1	LIM1_LMO4	78..132	CDD:188772	16/53 (30%)
		LIM	142..212	CDD:413332	21/69 (30%)
lim-4	NP_508669.1	LIM	98..153	CDD:395333	17/57 (30%)
		LIM2_AWH	168..222	CDD:188765	21/69 (30%)
		Homeodomain	240..296	CDD:459649	2/4 (50%)